Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0820
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    30   1.7  
AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical...    28   6.7  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    28   6.7  

>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 506 KCGVLSFVHIFDSFRLHRYVYIIFC 432
           +C V   + ++ +F LH++V +IFC
Sbjct: 286 RCNVHEVIDLYSTFDLHKFVKVIFC 310


>AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12a protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   FYYYMVYWNCYTLTLHF 56
           FY+  VYW C+TL   F
Sbjct: 223 FYFLTVYWTCWTLLFAF 239


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   FYYYMVYWNCYTLTLHF 56
           FY+  VYW C+TL   F
Sbjct: 323 FYFLTVYWTCWTLLFAF 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,260
Number of Sequences: 27780
Number of extensions: 294457
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)