Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0818
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 109 2e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 102 2e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 9e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 71 5e-13
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.074
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.13
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.17
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.30
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 32 0.40
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.2
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.6
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_3191| Best HMM Match : ig (HMM E-Value=3.5e-16) 29 2.8
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 3.7
SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 29 3.7
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 8.5
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 109 bits (261), Expect = 2e-24
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +2
Query: 257 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 436
L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTREH
Sbjct: 5 LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64
Query: 437 ALLAFTLGVKQLIVGVNKMD 496
A+L +LGV QLIV +NK+D
Sbjct: 65 AILVRSLGVTQLIVAINKLD 84
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 102 bits (245), Expect = 2e-22
Identities = 46/101 (45%), Positives = 67/101 (66%)
Frame = +2
Query: 266 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 445
F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276
Query: 446 AFTLGVKQLIVGVNKMDSTEPHTVSPDLRKSKKEVSSYIKK 568
A T GVK L++ VNKMD + K +++ ++KK
Sbjct: 277 AKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKK 317
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/47 (40%), Positives = 34/47 (72%)
Frame = +3
Query: 114 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 254
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEV 212
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 9e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 176
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 71.3 bits (167), Expect = 5e-13
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +2
Query: 254 SLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 352
+LWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 28 ALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 174 MGKGSFKYAWVLDKLKAERERGITIDI 254
MGKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDI 27
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.018
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 234 RGITI 248
RGIT+
Sbjct: 1987 RGITV 1991
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.074
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 466
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 467 QLIVGVNKMD 496
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 296 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 475
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 476 VGVNKMD 496
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 466
+ +D PGH F G D +++VAA QT+E A GV
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191
Query: 467 QLIVGVNKMDSTEPHTVSPDLRKSKKEVSSYIKKNW 574
+I +NK+D +P+ +PD K++ + + ++W
Sbjct: 192 PIIFAINKID--KPN-ANPDNIKTQLSTMNLLVEDW 224
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 125
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 281 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 391
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +2
Query: 293 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG-EFEAGISKNGQTREHALLAFTLG-VK 466
IID PGH F G+S D A+L+V G E + S N + L V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKKRKTPFVVALNKVD 741
Query: 467 QLIVGVNKMDSTEPHTVSPDLRKSKKE 547
+L DS+ +T+ R +K+E
Sbjct: 742 RLFEWKRGPDSSISNTIKKQKRNTKQE 768
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 391
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 63 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 242
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 243 TI 248
++
Sbjct: 66 SV 67
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 45 THINIVVIGHVDSGKSTTTGHLIY 116
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_3191| Best HMM Match : ig (HMM E-Value=3.5e-16)
Length = 326
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 301 INDGNIVLASFELPERISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 125
+ND VL F L RIS + P+ + TQA L P I +FS +++ +P
Sbjct: 133 VNDRYTVLEDFSL--RISGMTPKDEGNYIFEVTQAALFRPFTIKAIAFSPPEIIQQPVP 189
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ ++ TT+T S YPS+ + + +F D T N T V +++
Sbjct: 1030 RTASTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
>SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 301 INDGNIVLASFELPERISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 125
+ND VL F L RIS + P+ + TQA L P I +FS +++ +P
Sbjct: 153 VNDRYSVLEDFSL--RISGMTPKDEGNYIFEVTQAALFRPFTIKAIAFSPPEIIQQPVP 209
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -2
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 338 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPHTV 517
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ + HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 518 S 520
+
Sbjct: 849 A 849
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 430
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,933
Number of Sequences: 59808
Number of extensions: 366587
Number of successful extensions: 966
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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