Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54B72 Cluster: Putative uncharacterized protein; n=1; ...    34   0.53 
UniRef50_A6TSA1 Cluster: ResB protein required for cytochrome c ...    30   8.6  

>UniRef50_Q54B72 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 563

 Score = 34.3 bits (75), Expect = 0.53
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +1

Query: 58  YLKESNFES*IRISIDFRYQINN*KKNCLSLVFEIYCLLITF 183
           YLK++N E  ++++ D  Y + +   +C SL+FE+Y  L+TF
Sbjct: 70  YLKKANQEFFVQMAKDQNYTLED--GDCFSLLFEMYTFLVTF 109


>UniRef50_A6TSA1 Cluster: ResB protein required for cytochrome c
           biosynthesis-like protein precursor; n=1; Alkaliphilus
           metalliredigens QYMF|Rep: ResB protein required for
           cytochrome c biosynthesis-like protein precursor -
           Alkaliphilus metalliredigens QYMF
          Length = 426

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 284 TGNG*IYIGSLLVRILFVENVRFF-FNSYTYVCTA 183
           TGN   YIGS L  + F+  + F+ +  YTYV TA
Sbjct: 146 TGNNIRYIGSWLTHVGFLLIIIFYAYGQYTYVSTA 180


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,726,727
Number of Sequences: 1657284
Number of extensions: 3993599
Number of successful extensions: 6740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6739
length of database: 575,637,011
effective HSP length: 72
effective length of database: 456,312,563
effective search space used: 10038876386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)