Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    24   4.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    24   4.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    23   6.5  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    23   8.5  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    23   8.5  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    23   8.5  

>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 FLRIEFSPTNYQYIFNHFQ 283
           F   +F P+  QYI N+FQ
Sbjct: 78  FQTADFDPSLLQYILNYFQ 96


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 224 VRFFFNSYTYVCTAN 180
           +RF  N Y Y+CT N
Sbjct: 12  LRFLENQYVYLCTLN 26


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 142 LSLVFEIYCLLITFAVHTYV*ELKKNLTFST 234
           L   F I  +L+T+ +  YV E++ +  F+T
Sbjct: 18  LGFAFAIVMILVTYVLKRYVGEVQDSEHFTT 48


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 22  TKVMEIVLFVVIYLKESNFES*IRISIDFRYQINN*KKNCLSLVFE 159
           ++V + +  ++ Y+ E      +  S   +Y INN +  CL   FE
Sbjct: 154 SRVAKEIPILLTYMTEDPIVPSVLSSASAKYLINNLQLKCLDRPFE 199


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 257 SLLVRILFVENVRFFFNSYTYVCTANVI 174
           SL V ILF +++ +FFN+   + + + I
Sbjct: 192 SLFVGILFEDDLWYFFNTLYMLSSTSAI 219


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 190 VRQMLSVSNKFRKPMISNFFFNC*FDTENLYLF*FSFQSL 71
           ++++++ S + + P  SNF      D  NLYL   +F +L
Sbjct: 821 LKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTL 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,109,077
Number of Sequences: 5004
Number of extensions: 19985
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)