BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0817 (284 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe... 24 4.9 SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 24 4.9 SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 23 6.5 SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 23 8.5 SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 23 8.5 SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 23 8.5 >SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 23.8 bits (49), Expect = 4.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +2 Query: 227 FLRIEFSPTNYQYIFNHFQ 283 F +F P+ QYI N+FQ Sbjct: 78 FQTADFDPSLLQYILNYFQ 96 >SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 988 Score = 23.8 bits (49), Expect = 4.9 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -1 Query: 224 VRFFFNSYTYVCTAN 180 +RF N Y Y+CT N Sbjct: 12 LRFLENQYVYLCTLN 26 >SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 661 Score = 23.4 bits (48), Expect = 6.5 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +1 Query: 142 LSLVFEIYCLLITFAVHTYV*ELKKNLTFST 234 L F I +L+T+ + YV E++ + F+T Sbjct: 18 LGFAFAIVMILVTYVLKRYVGEVQDSEHFTT 48 >SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 224 Score = 23.0 bits (47), Expect = 8.5 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = +1 Query: 22 TKVMEIVLFVVIYLKESNFES*IRISIDFRYQINN*KKNCLSLVFE 159 ++V + + ++ Y+ E + S +Y INN + CL FE Sbjct: 154 SRVAKEIPILLTYMTEDPIVPSVLSSASAKYLINNLQLKCLDRPFE 199 >SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces pombe|chr 2|||Manual Length = 878 Score = 23.0 bits (47), Expect = 8.5 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -1 Query: 257 SLLVRILFVENVRFFFNSYTYVCTANVI 174 SL V ILF +++ +FFN+ + + + I Sbjct: 192 SLFVGILFEDDLWYFFNTLYMLSSTSAI 219 >SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1045 Score = 23.0 bits (47), Expect = 8.5 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -2 Query: 190 VRQMLSVSNKFRKPMISNFFFNC*FDTENLYLF*FSFQSL 71 ++++++ S + + P SNF D NLYL +F +L Sbjct: 821 LKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTL 860 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,109,077 Number of Sequences: 5004 Number of extensions: 19985 Number of successful extensions: 38 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 38 length of database: 2,362,478 effective HSP length: 62 effective length of database: 2,052,230 effective search space used: 65671360 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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