Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             26   5.6  
SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)           26   5.6  
SB_40079| Best HMM Match : Ank (HMM E-Value=3.2e-17)                   25   7.4  
SB_47941| Best HMM Match : Ank (HMM E-Value=3.2e-17)                   25   7.4  

>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 184 QMLSVSNKFRKPMISNFFFNC*FDTENL 101
           ++L + N+ +KP+   F F C F  ENL
Sbjct: 164 KVLDLINRQKKPIKVKFIFTCKFVKENL 191


>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
          Length = 682

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 184 QMLSVSNKFRKPMISNFFFNC*FDTENL 101
           ++L + N+ +KP+   F F C F  ENL
Sbjct: 128 KVLDLINRQKKPIKVKFIFTCKFVKENL 155


>SB_40079| Best HMM Match : Ank (HMM E-Value=3.2e-17)
          Length = 250

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 141 LIIGFRNLLLTDNICRTYIRIRIKE-KPNIFYE*NSHQQTTNIYL 272
           L++G R +   D +CR + R RI    P + +  + H   T++ L
Sbjct: 30  LVVGTREVRSLDEVCRRFRRFRIPAVLPAVHWTFSFHLVNTSLKL 74


>SB_47941| Best HMM Match : Ank (HMM E-Value=3.2e-17)
          Length = 250

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 141 LIIGFRNLLLTDNICRTYIRIRIKE-KPNIFYE*NSHQQTTNIYL 272
           L++G R +   D +CR + R RI    P + +  + H   T++ L
Sbjct: 30  LVVGTREVRSLDEVCRRFRRFRIPAVLPAVHWTFSFHLVNTSLKL 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,389,089
Number of Sequences: 59808
Number of extensions: 113713
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)