SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13857-1|AAA35913.1| 1333|Homo sapiens guanine nucleotide exchan...    28   4.8  
AF441482-1|AAM22406.1| 1105|Homo sapiens alternate SOS1 protein.       28   4.8  
AC019171-1|AAX93186.1| 1304|Homo sapiens unknown protein.              28   4.8  
BC032446-1|AAH32446.1|  767|Homo sapiens cold shock domain conta...    27   8.3  
BC021692-1|AAH21692.1|  272|Homo sapiens CSDE1 protein protein.        27   8.3  
AY049788-1|AAL15445.1|  708|Homo sapiens NRAS-related protein pr...    27   8.3  
AL096773-5|CAI18825.1|  798|Homo sapiens cold shock domain conta...    27   8.3  
AL096773-4|CAI18826.1|  767|Homo sapiens cold shock domain conta...    27   8.3  
AL050150-1|CAB43294.1|  369|Homo sapiens hypothetical protein pr...    27   8.3  
AK022528-1|BAB14080.1|  767|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AK022516-1|BAB14073.1|  767|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AB020692-1|BAA74908.2|  826|Homo sapiens KIAA0885 protein protein.     27   8.3  

>L13857-1|AAA35913.1| 1333|Homo sapiens guanine nucleotide exchange
           factor protein.
          Length = 1333

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 202 IRMYVRQMLSVSNKFRKPMISNFFFNC*FDTENLY 98
           IR Y+R++  +   FR+P +SN       D EN++
Sbjct: 212 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246


>AF441482-1|AAM22406.1| 1105|Homo sapiens alternate SOS1 protein.
          Length = 1105

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 202 IRMYVRQMLSVSNKFRKPMISNFFFNC*FDTENLY 98
           IR Y+R++  +   FR+P +SN       D EN++
Sbjct: 212 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246


>AC019171-1|AAX93186.1| 1304|Homo sapiens unknown protein.
          Length = 1304

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 202 IRMYVRQMLSVSNKFRKPMISNFFFNC*FDTENLY 98
           IR Y+R++  +   FR+P +SN       D EN++
Sbjct: 183 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 217


>BC032446-1|AAH32446.1|  767|Homo sapiens cold shock domain
           containing E1, RNA-binding protein.
          Length = 767

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521


>BC021692-1|AAH21692.1|  272|Homo sapiens CSDE1 protein protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57 NHDKQHYFHYFCFFGD 10
          NHDK+ +FHY  F GD
Sbjct: 11 NHDKEIFFHYSEFSGD 26


>AY049788-1|AAL15445.1|  708|Homo sapiens NRAS-related protein
           protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521


>AL096773-5|CAI18825.1|  798|Homo sapiens cold shock domain
           containing E1, RNA-binding protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 537 NHDKEIFFHYSEFSGD 552


>AL096773-4|CAI18826.1|  767|Homo sapiens cold shock domain
           containing E1, RNA-binding protein.
          Length = 767

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521


>AL050150-1|CAB43294.1|  369|Homo sapiens hypothetical protein
           protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 108 NHDKEIFFHYSEFSGD 123


>AK022528-1|BAB14080.1|  767|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
           UNR PROTEIN. ).
          Length = 767

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521


>AK022516-1|BAB14073.1|  767|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
           UNR PROTEIN. ).
          Length = 767

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521


>AB020692-1|BAA74908.2|  826|Homo sapiens KIAA0885 protein protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  NHDKQHYFHYFCFFGD 10
           NHDK+ +FHY  F GD
Sbjct: 565 NHDKEIFFHYSEFSGD 580


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,642,310
Number of Sequences: 237096
Number of extensions: 582161
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -