Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0817
(284 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13857-1|AAA35913.1| 1333|Homo sapiens guanine nucleotide exchan... 28 4.8
AF441482-1|AAM22406.1| 1105|Homo sapiens alternate SOS1 protein. 28 4.8
AC019171-1|AAX93186.1| 1304|Homo sapiens unknown protein. 28 4.8
BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain conta... 27 8.3
BC021692-1|AAH21692.1| 272|Homo sapiens CSDE1 protein protein. 27 8.3
AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein pr... 27 8.3
AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain conta... 27 8.3
AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain conta... 27 8.3
AL050150-1|CAB43294.1| 369|Homo sapiens hypothetical protein pr... 27 8.3
AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens ... 27 8.3
AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens ... 27 8.3
AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein. 27 8.3
>L13857-1|AAA35913.1| 1333|Homo sapiens guanine nucleotide exchange
factor protein.
Length = 1333
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 202 IRMYVRQMLSVSNKFRKPMISNFFFNC*FDTENLY 98
IR Y+R++ + FR+P +SN D EN++
Sbjct: 212 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246
>AF441482-1|AAM22406.1| 1105|Homo sapiens alternate SOS1 protein.
Length = 1105
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 202 IRMYVRQMLSVSNKFRKPMISNFFFNC*FDTENLY 98
IR Y+R++ + FR+P +SN D EN++
Sbjct: 212 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 246
>AC019171-1|AAX93186.1| 1304|Homo sapiens unknown protein.
Length = 1304
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 202 IRMYVRQMLSVSNKFRKPMISNFFFNC*FDTENLY 98
IR Y+R++ + FR+P +SN D EN++
Sbjct: 183 IRQYIRELNLIIKVFREPFVSNSKLFSANDVENIF 217
>BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521
>BC021692-1|AAH21692.1| 272|Homo sapiens CSDE1 protein protein.
Length = 272
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 11 NHDKEIFFHYSEFSGD 26
>AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein
protein.
Length = 708
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521
>AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 798
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 537 NHDKEIFFHYSEFSGD 552
>AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521
>AL050150-1|CAB43294.1| 369|Homo sapiens hypothetical protein
protein.
Length = 369
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 108 NHDKEIFFHYSEFSGD 123
>AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521
>AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 506 NHDKEIFFHYSEFSGD 521
>AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein.
Length = 826
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 57 NHDKQHYFHYFCFFGD 10
NHDK+ +FHY F GD
Sbjct: 565 NHDKEIFFHYSEFSGD 580
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,642,310
Number of Sequences: 237096
Number of extensions: 582161
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -