BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0817 (284 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical... 29 0.71 Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical pr... 27 2.9 AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm rece... 26 3.8 U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical pr... 26 5.0 >AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical protein Y38E10A.28 protein. Length = 397 Score = 28.7 bits (61), Expect = 0.71 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 136 NCLSLVFEIYCLLITFAVHTYV*ELKKNLTFSTNRILT 249 NC+SL F ++ L +FA+ Y E K N F ILT Sbjct: 9 NCVSLYFLLF--LSSFAIDLYTLETKNNSRFKALPILT 44 >Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical protein T11F9.4 protein. Length = 523 Score = 26.6 bits (56), Expect = 2.9 Identities = 10/19 (52%), Positives = 17/19 (89%) Frame = -2 Query: 244 EFYS*KMLGFSLILIRMYV 188 EF++ K+LGFSLI++ M++ Sbjct: 139 EFWAKKLLGFSLIILLMFM 157 >AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm receptor protein 222 protein. Length = 367 Score = 26.2 bits (55), Expect = 3.8 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -1 Query: 218 FFFNSYTYVCTANVISKQ*ISKTN--DKQFFF*LLI 117 FFF Y C N++ + SK+N +Q F+ L+I Sbjct: 223 FFFGIKCYFCIQNMVKQSASSKSNALQRQLFYALVI 258 >U23486-4|AAC46776.2| 261|Caenorhabditis elegans Hypothetical protein F07F6.2 protein. Length = 261 Score = 25.8 bits (54), Expect = 5.0 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 135 KLLIIGFRNLLLTDNICRTYIRIR 206 +LL++ F+NLLL IC Y IR Sbjct: 129 ELLLLYFQNLLLLPYICGGYFLIR 152 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,000,389 Number of Sequences: 27780 Number of extensions: 105852 Number of successful extensions: 236 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 236 length of database: 12,740,198 effective HSP length: 69 effective length of database: 10,823,378 effective search space used: 270584450 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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