Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical...    29   0.71 
Z74042-3|CAA98529.2|  523|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm rece...    26   3.8  
U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical pr...    26   5.0  

>AL110484-27|CAI46626.1|  397|Caenorhabditis elegans Hypothetical
           protein Y38E10A.28 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 136 NCLSLVFEIYCLLITFAVHTYV*ELKKNLTFSTNRILT 249
           NC+SL F ++  L +FA+  Y  E K N  F    ILT
Sbjct: 9   NCVSLYFLLF--LSSFAIDLYTLETKNNSRFKALPILT 44


>Z74042-3|CAA98529.2|  523|Caenorhabditis elegans Hypothetical
           protein T11F9.4 protein.
          Length = 523

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = -2

Query: 244 EFYS*KMLGFSLILIRMYV 188
           EF++ K+LGFSLI++ M++
Sbjct: 139 EFWAKKLLGFSLIILLMFM 157


>AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 222 protein.
          Length = 367

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 218 FFFNSYTYVCTANVISKQ*ISKTN--DKQFFF*LLI 117
           FFF    Y C  N++ +   SK+N   +Q F+ L+I
Sbjct: 223 FFFGIKCYFCIQNMVKQSASSKSNALQRQLFYALVI 258


>U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical
           protein F07F6.2 protein.
          Length = 261

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 135 KLLIIGFRNLLLTDNICRTYIRIR 206
           +LL++ F+NLLL   IC  Y  IR
Sbjct: 129 ELLLLYFQNLLLLPYICGGYFLIR 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,000,389
Number of Sequences: 27780
Number of extensions: 105852
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)