Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   6.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   6.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 239 LFVENVRFFFNSYTYVCTA 183
           L +ENV    +  TY C A
Sbjct: 545 LIIENVERMSDQATYTCVA 563


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 139 CLSLVFEIYCLLITFA 186
           C   + E +C+ ITFA
Sbjct: 70  CCGAIRESHCMTITFA 85


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 230 ENVRFFFNSYTYVCTANVISKQ*ISKTNDK 141
           EN+  FF S   V T     ++ I+ +ND+
Sbjct: 549 ENIERFFKSKPPVATMYGSDEEIINSSNDE 578


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 139 CLSLVFEIYCLLITFAVHTYV 201
           CL +VF +   L  +  HTY+
Sbjct: 233 CLEVVFVLKRRLGYYLFHTYI 253


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 60 VNHDKQHYFHYFCFFGDRG 4
          + + K+HY H   F+  +G
Sbjct: 1  MENQKEHYRHILLFYFRKG 19


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 3   IRGRRKNKSNGNSVVCRDLPKGI 71
           +  R  +  N + V+  DLPKGI
Sbjct: 510 VAARGLDIKNVSHVINYDLPKGI 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,312
Number of Sequences: 438
Number of extensions: 1320
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)