Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0817
         (284 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04700.1 68418.m00478 hypothetical protein                          26   4.6  
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro...    25   6.1  
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    25   8.1  
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ...    25   8.1  

>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 15  RKNKSNGNSVVCRDLPKGIXXXXXXXXXYRFSVSN*QLKKKLLIIGFRNLLL 170
           R N+   N+++ R L KG+         YR  V + Q KK LL I    L L
Sbjct: 300 RSNRDQQNTLM-RKLLKGLSKWTGIDEVYRLKVMHLQAKKLLLGISEETLAL 350


>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
           protein similar to ubiquitin-conjugating enzyme
           GB:3319990 from [Mus musculus]; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 1163

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 251 LVRILFVENVRFFFNSYTYVCTANVIS 171
           L  I F   +  FF S+ YVC A+++S
Sbjct: 844 LYGISFFITIVAFFGSWVYVCLADLVS 870


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 229 KMLGFSLILIRMYVRQMLSVSNKFRKPMISNFFFN 125
           K++  +L   ++ VRQ++SVS+ F +   ++  FN
Sbjct: 42  KIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFN 76


>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
           similar to myb protein cY13 GI:928930 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00249 myb
           DNA-binding domain; identical to cDNA cY13 gene
           GI:928929
          Length = 330

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 117 N*QLKKKLLIIGFRNLLLTDNICRTYIRIRIKEKPNIFYE*NSHQQTTN 263
           N  LKKKL+++ F+N ++ +N  +T +   I    N     N +++TTN
Sbjct: 109 NTHLKKKLVMMKFQNGIINEN--KTNLATDISSCNNNNNGCNHNKRTTN 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,386,257
Number of Sequences: 28952
Number of extensions: 87882
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)