Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0815
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.3  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 198 DCDDEEDQVDIGISYAPIKEATCEP 272
           DC DE D+    +   P +   C+P
Sbjct: 133 DCKDESDENSCTVETDPNRALDCDP 157


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 198 DCDDEEDQVDIGISYAPIKEATCEP 272
           DC DE D+    +   P +   C+P
Sbjct: 140 DCKDESDENSCTVETDPNRAPDCDP 164


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 198 DCDDEEDQVDIGISYAPIKEATCEPPV 278
           DC D  D+    I   P +   C+P V
Sbjct: 141 DCSDGSDENTCDIDNDPNRAPPCDPAV 167


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 1   DAPASARDPDTTKVKR 48
           D P+S R P T +VK+
Sbjct: 201 DRPSSGRSPRTRRVKK 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,864
Number of Sequences: 336
Number of extensions: 2678
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)