Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0815
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    27   2.6  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   6.1  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   8.0  

>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 370 RHLTAQRSNIYKSSVKKLI*ELILNSIDPSTA 465
           R+   +R+N+ K++VKKL  +++  S+ P+ A
Sbjct: 107 RYEVFRRANLNKTNVKKLANQILNQSVTPNVA 138


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 387 LGCQVSLMAKDRRHVLEPRADSSLHPRGA 301
           +G  +SL+ +D RH++EP     L  R A
Sbjct: 38  VGRSLSLLTRDLRHMMEPHTAIRLKERKA 66


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 333 LAPAHADDPWPLATPDSPKIKHLQVQCEKTHMRVNIEFDRPFYGMIFSKGFYSD 494
           +AP      + +ATP  P +  L  +  K+ + + I   RP++G+  ++  +++
Sbjct: 244 MAPKSLQYDFMIATPKHPFVLSLINELCKSEVLLKILSKRPYHGLDAAEALFAE 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,233
Number of Sequences: 5004
Number of extensions: 43416
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)