Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0815
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0046 - 15400890-15403097 31 0.66
11_01_0318 - 2373511-2375073 30 1.5
04_04_1322 + 32640414-32642327 30 1.5
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 29 2.7
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 2.7
04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029... 29 3.5
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 28 4.7
02_04_0534 + 23725051-23726253 28 4.7
08_02_1281 - 25849918-25851099 28 6.2
04_04_0347 + 24564589-24565296 28 6.2
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 28 6.2
02_05_1333 - 35761405-35761822,35762551-35763155 27 8.2
>01_04_0046 - 15400890-15403097
Length = 735
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 107 EADSAIDHCSRVHKAQILVTRFTFV-VSGSRADAGA 3
EADSA+ S++H A T FTFV V + +D GA
Sbjct: 301 EADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGA 336
>11_01_0318 - 2373511-2375073
Length = 520
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 411 TGLVNV*SLGCQVSLMAKDRRHVLEPRADSSLHPRGAPMVAKL 283
TG V+V LGC V+ + H+L R D+ P+G P A L
Sbjct: 80 TGTVHVHVLGCTVTANPANVEHMLRTRFDN--FPKGRPFAALL 120
>04_04_1322 + 32640414-32642327
Length = 637
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSPKIKHLQV--QCEKTHM 428
P D S + + GG P L +DD P TP I+H++ C+ H+
Sbjct: 135 PLTDEGSTSAKRKPGGYVLPLLFAPRSDDICPNGTPPVTDIQHVETVDDCDDDHI 189
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 209 IVTVQSVNARIISVT*IPNRLFRLKTFRG-EVSAEEA-DSAIDHCSRVHKAQIL 54
+V +Q ++ + +P RL+ LK R ++S A + +++CS++HK ++L
Sbjct: 549 LVALQHLDLSYTHIMRLPERLWLLKELRHLDLSVTVALEDTLNNCSKLHKLRVL 602
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +3
Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSPKIK 395
PP S S P + GGG PP P+H P P A P K
Sbjct: 1180 PPSPSQSAPPANTGGGG-SPP--PSHGSPPAPKAVQSQPAPK 1218
>04_04_0310 -
24301274-24301945,24302035-24302365,24302629-24302954,
24303039-24303413
Length = 567
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSPK 389
P D A+ P+ AGG C P+ PA AD + P P+
Sbjct: 72 PRFDPATRPVRE-AGGWACAPVPPAIADRTVEITGPAEPR 110
>06_02_0068 + 11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +3
Query: 384 PKIKHLQVQCEKTHMRVNIEFDRPFYGMIFSKGFYSDPHCNALKPGTGH 530
PKI L + H R N+ +R +I + SD H L GH
Sbjct: 1107 PKINALSFESNSLHWRYNLMANRVLLLLILASRSESDIHSQILSETAGH 1155
>02_04_0534 + 23725051-23726253
Length = 400
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 318 GYCPPLAPAHADDPWPLATPDSPKIKH 398
G PPLAP A P PDSP+ H
Sbjct: 55 GALPPLAPPPAAPLAPAPPPDSPRTPH 81
>08_02_1281 - 25849918-25851099
Length = 393
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHAD 353
P SA+ P R G YCP AP HAD
Sbjct: 35 PSSPSAARP--PRRDGAYCPRAAPPHAD 60
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 237 SYAPIKEATCEPPV--DSASLPLEHRAGGGYCPPLAPAHADDP 359
+YAP P S S P +H A G + P AP HAD P
Sbjct: 28 AYAPYPHHHAPWPARAQSPSAP-DHGAHGHHAPAPAPVHADQP 69
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 PIKEATCEPPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPD-SPKIKHLQVQCEKT 422
P + C PP P GG PP P+ D P ATP P+ K + + T
Sbjct: 127 PNRPPLCFPPRSKTMAPGRKMLGGKNKPPHPPSVLPD--PAATPCLPPRSKTMVLGGNST 184
Query: 423 HMR 431
H R
Sbjct: 185 HSR 187
>02_05_1333 - 35761405-35761822,35762551-35763155
Length = 340
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 261 TCEPPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPD 380
TC PP A PL H + P +P+ + P A D
Sbjct: 51 TCTPPPPMAMTPLHHTCSFFFRPQPSPSLSHSPCAAAADD 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,206
Number of Sequences: 37544
Number of extensions: 320906
Number of successful extensions: 996
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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