BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0815 (579 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_27339| Best HMM Match : rve (HMM E-Value=0.0016) 32 0.29 SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51 SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8 SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7) 28 6.3 SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 27 8.4 SB_12540| Best HMM Match : Pep_M12B_propep (HMM E-Value=3.4e-07) 27 8.4 SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 27 8.4 >SB_27339| Best HMM Match : rve (HMM E-Value=0.0016) Length = 551 Score = 32.3 bits (70), Expect = 0.29 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +3 Query: 330 PLAPAHADDPWPLATPDSPKIKHLQVQCEKTHMRVNIEFDRPFYGMIFS 476 P AD PW TPDSP ++ V C M + YG++F+ Sbjct: 304 PCEQRMADLPWDRVTPDSPPFSYVGVDCFGPFMIKRSRSEVKRYGVMFT 352 >SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 471 Score = 31.5 bits (68), Expect = 0.51 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 282 SASLPLEHRAGGGYCPPLAPAHADDPWPL 368 S+ PL AG YC PL+ H PWP+ Sbjct: 306 SSCCPLVKSAGQTYCRPLSKHHPQLPWPV 334 >SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1438 Score = 28.7 bits (61), Expect = 3.6 Identities = 16/58 (27%), Positives = 25/58 (43%) Frame = +3 Query: 186 VD*LDCDDEEDQVDIGISYAPIKEATCEPPVDSASLPLEHRAGGGYCPPLAPAHADDP 359 VD ++ ++EE Q + EAT E P++ A E P +A A+ P Sbjct: 562 VDKVEAEEEETQTESPTEKVEEAEATAEVPIEDADTSTEEAESPAAEPEVAVKEAEAP 619 >SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 328 Score = 28.3 bits (60), Expect = 4.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 384 GCQVSLMAKDRRHVLEPRADSSLHPR 307 GC+ SL + RH ++PR LHPR Sbjct: 230 GCE-SLASPPERHAVDPRISHVLHPR 254 >SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7) Length = 834 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = +3 Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWP 365 PP+ S P H AG CP +P D P Sbjct: 8 PPLPSVPRPPLHAAGSSCCPASSPPRLPDDHP 39 >SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35) Length = 343 Score = 27.5 bits (58), Expect = 8.4 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Frame = +3 Query: 243 APIKEATCEPPVDSASLPLEHRAGG-GYCPPLAPAHADDPWPLATPD 380 +P+ A PPVDSA R P AP PW PD Sbjct: 222 SPVDSAKARPPVDSARARYPRRQRHIKKLPWTAPEQDPPPWTAPEPD 268 >SB_12540| Best HMM Match : Pep_M12B_propep (HMM E-Value=3.4e-07) Length = 697 Score = 27.5 bits (58), Expect = 8.4 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = -3 Query: 124 VRCRRKKQIQLSITVQEFTKHRSLSHVSLSLCRGRVRTP 8 ++C RK ++ +S+T+ H SL + C V P Sbjct: 584 LKCTRKNRVGVSVTIHNLLCHHSLKPTTEMACNQDVPCP 622 >SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) Length = 1023 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +3 Query: 237 SYAPIKEATCEPPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSPKI 392 +Y+P TC+P L G YC P PA + P TP SP++ Sbjct: 814 TYSPPGFGTCKPCQSGKKLVNPVNPGATYCTP-CPAGSSCP----TPSSPRV 860 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,450,568 Number of Sequences: 59808 Number of extensions: 351426 Number of successful extensions: 847 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 847 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1385833362 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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