Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0815
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27339| Best HMM Match : rve (HMM E-Value=0.0016)                    32   0.29 
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7)               28   6.3  
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               27   8.4  
SB_12540| Best HMM Match : Pep_M12B_propep (HMM E-Value=3.4e-07)       27   8.4  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              27   8.4  

>SB_27339| Best HMM Match : rve (HMM E-Value=0.0016)
          Length = 551

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 330 PLAPAHADDPWPLATPDSPKIKHLQVQCEKTHMRVNIEFDRPFYGMIFS 476
           P     AD PW   TPDSP   ++ V C    M      +   YG++F+
Sbjct: 304 PCEQRMADLPWDRVTPDSPPFSYVGVDCFGPFMIKRSRSEVKRYGVMFT 352


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 282 SASLPLEHRAGGGYCPPLAPAHADDPWPL 368
           S+  PL   AG  YC PL+  H   PWP+
Sbjct: 306 SSCCPLVKSAGQTYCRPLSKHHPQLPWPV 334


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 186 VD*LDCDDEEDQVDIGISYAPIKEATCEPPVDSASLPLEHRAGGGYCPPLAPAHADDP 359
           VD ++ ++EE Q +         EAT E P++ A    E        P +A   A+ P
Sbjct: 562 VDKVEAEEEETQTESPTEKVEEAEATAEVPIEDADTSTEEAESPAAEPEVAVKEAEAP 619


>SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 384 GCQVSLMAKDRRHVLEPRADSSLHPR 307
           GC+ SL +   RH ++PR    LHPR
Sbjct: 230 GCE-SLASPPERHAVDPRISHVLHPR 254


>SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7)
          Length = 834

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWP 365
           PP+ S   P  H AG   CP  +P    D  P
Sbjct: 8   PPLPSVPRPPLHAAGSSCCPASSPPRLPDDHP 39


>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 343

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +3

Query: 243 APIKEATCEPPVDSASLPLEHRAGG-GYCPPLAPAHADDPWPLATPD 380
           +P+  A   PPVDSA      R       P  AP     PW    PD
Sbjct: 222 SPVDSAKARPPVDSARARYPRRQRHIKKLPWTAPEQDPPPWTAPEPD 268


>SB_12540| Best HMM Match : Pep_M12B_propep (HMM E-Value=3.4e-07)
          Length = 697

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 124 VRCRRKKQIQLSITVQEFTKHRSLSHVSLSLCRGRVRTP 8
           ++C RK ++ +S+T+     H SL   +   C   V  P
Sbjct: 584 LKCTRKNRVGVSVTIHNLLCHHSLKPTTEMACNQDVPCP 622


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 237 SYAPIKEATCEPPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSPKI 392
           +Y+P    TC+P      L      G  YC P  PA +  P    TP SP++
Sbjct: 814 TYSPPGFGTCKPCQSGKKLVNPVNPGATYCTP-CPAGSSCP----TPSSPRV 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,568
Number of Sequences: 59808
Number of extensions: 351426
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)