Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0815
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 269 LACCFFNRSVANTNVNLILFIVTVQSVNARIISV 168
           L C  +  +V    VN  LF++  Q  + RI ++
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTI 36


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 269 LACCFFNRSVANTNVNLILFIVTVQSVNARIISV 168
           L C  +  +V    VN  LF++  Q  + RI ++
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTI 36


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 269 LACCFFNRSVANTNVNLILFIVTVQSVNARIISV 168
           L C  +  +V    VN  LF++  Q  + RI ++
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTI 36


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 83  CSRVHKAQILVTRFTFVVSGSRA 15
           C RVH ++I    + F+V G  A
Sbjct: 56  CQRVHSSRIPDLSYDFIVVGGGA 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,017
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)