BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0815 (579 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 28 3.9 At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 27 6.8 At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 6.8 At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 27 9.0 At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 27 9.0 >At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam profile PF00018: SH3 domain Length = 1196 Score = 28.3 bits (60), Expect = 3.9 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = +3 Query: 147 QSIGDLCHRNNSGVD*LDCDDEEDQVDIGISYAPIKEATCEPPVDSASLPLEHRAGGG-- 320 + +GD+ H+ GV D+E + + YA + A P+D + HRA G Sbjct: 258 EKVGDVPHKRKKGVFGTKGGDKESIMRSNLQYAAM-SALRRLPLDPGNPLFLHRAAQGVF 316 Query: 321 YCPPLAPAHA 350 + P+A H+ Sbjct: 317 FADPVAVRHS 326 >At4g12610.1 68417.m01987 transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein low similarity to SP|Q05913 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) (Transcription factor 5, large chain) (TF5A) {Drosophila melanogaster}; contains Pfam profile PF05793: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Length = 543 Score = 27.5 bits (58), Expect = 6.8 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 120 LTSEGLQPEQSIGDLCHRNNSGVD*LDCDDEEDQVDIG-ISYAPIKEATCEPPVDSA 287 L+ G + ++ +G + S D D D+E++ + G ++ + KEA E PVD+A Sbjct: 337 LSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNA 393 >At2g15880.1 68415.m01820 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 727 Score = 27.5 bits (58), Expect = 6.8 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSP 386 PPV S P+ Y PP P H+ P P+ +P P Sbjct: 568 PPVHSPPPPVHSPPPPVYSPPPPPVHSPPP-PVHSPPPP 605 >At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family Length = 451 Score = 27.1 bits (57), Expect = 9.0 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 189 QRQNYFGDINPQSTVQVEDLQR*GVGGRSRFSYRSLFKSSQSTDPCHTFH 40 Q ++Y NP+ + + + G GGRS + YRS S D C+ FH Sbjct: 215 QMKSYLSG-NPEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCN-FH 262 >At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family Length = 380 Score = 27.1 bits (57), Expect = 9.0 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -1 Query: 189 QRQNYFGDINPQSTVQVEDLQR*GVGGRSRFSYRSLFKSSQSTDPCHTFH 40 Q ++Y NP+ + + + G GGRS + YRS S D C+ FH Sbjct: 215 QMKSYLSG-NPEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCN-FH 262 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,039,501 Number of Sequences: 28952 Number of extensions: 243024 Number of successful extensions: 639 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 639 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1131744440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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