Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0815
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    28   3.9  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    27   6.8  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    27   6.8  
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun...    27   9.0  
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun...    27   9.0  

>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 147 QSIGDLCHRNNSGVD*LDCDDEEDQVDIGISYAPIKEATCEPPVDSASLPLEHRAGGG-- 320
           + +GD+ H+   GV      D+E  +   + YA +  A    P+D  +    HRA  G  
Sbjct: 258 EKVGDVPHKRKKGVFGTKGGDKESIMRSNLQYAAM-SALRRLPLDPGNPLFLHRAAQGVF 316

Query: 321 YCPPLAPAHA 350
           +  P+A  H+
Sbjct: 317 FADPVAVRHS 326


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 120 LTSEGLQPEQSIGDLCHRNNSGVD*LDCDDEEDQVDIG-ISYAPIKEATCEPPVDSA 287
           L+  G + ++ +G     + S  D  D  D+E++ + G ++ +  KEA  E PVD+A
Sbjct: 337 LSKSGKELKKLLGKANGLDESDEDDDDDSDDEEETNYGTVTNSKQKEAAKEEPVDNA 393


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 270 PPVDSASLPLEHRAGGGYCPPLAPAHADDPWPLATPDSP 386
           PPV S   P+       Y PP  P H+  P P+ +P  P
Sbjct: 568 PPVHSPPPPVHSPPPPVYSPPPPPVHSPPP-PVHSPPPP 605


>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 451

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 189 QRQNYFGDINPQSTVQVEDLQR*GVGGRSRFSYRSLFKSSQSTDPCHTFH 40
           Q ++Y    NP+  + + +    G GGRS + YRS   S    D C+ FH
Sbjct: 215 QMKSYLSG-NPEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCN-FH 262


>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 380

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 189 QRQNYFGDINPQSTVQVEDLQR*GVGGRSRFSYRSLFKSSQSTDPCHTFH 40
           Q ++Y    NP+  + + +    G GGRS + YRS   S    D C+ FH
Sbjct: 215 QMKSYLSG-NPEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCN-FH 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,039,501
Number of Sequences: 28952
Number of extensions: 243024
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)