Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0810
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    28   1.1  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   3.3  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
 Frame = +2

Query: 215 RVNLIYTIYSLPCMARV----------RQRVTRCRVPTAASPTVEYDALAAPRVLACGTR 364
           R++L+  I SLP +  V          RQ +TRC V  + SP  E D   A R  A    
Sbjct: 260 RISLVSLIESLPFLINVVALDKAAELTRQVITRCSVSDSHSPMHE-DIAKACRNAA---- 314

Query: 365 PPCCRQRFVFRYIVCTC*FNHVC*LNITYIFAYRQLVI----LI*SLFIRYITVK 517
           PP  R  F F  +V    F++ C   I   F +  ++I    L+ S F+  +T+K
Sbjct: 315 PPILR-HFSFGIVVLAI-FSY-CNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLK 366


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 130 LSLFRKCIKKLKT*INKYYL-ETIR 201
           LSL+++ +KK+ T I  YYL +T+R
Sbjct: 125 LSLYQRQLKKISTTIESYYLADTLR 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,633
Number of Sequences: 5004
Number of extensions: 32967
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)