Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0810
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350...    29   2.5  
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    29   3.4  
03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257...    28   4.4  
01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887     28   4.4  
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788...    27   7.7  
11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809           27   7.7  
08_02_1316 - 26088302-26088405,26089203-26089317                       27   7.7  
03_05_0356 - 23421394-23421870                                         27   7.7  

>05_01_0442 -
           3500849-3500866,3500950-3501027,3501260-3501352,
           3501419-3501536,3502815-3502945,3503027-3503299,
           3504825-3504882,3505065-3505388,3507404-3507852,
           3509514-3509554,3510263-3510412,3510519-3510906
          Length = 706

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 360 VPQASTRGAASASYSTVGDAAVGTRQRVTRWRTRAI 253
           V  A T GA+       GDA+    +RVTR R+R +
Sbjct: 17  VGAAGTAGASPVGVGPAGDASAAAGRRVTRLRSREL 52


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 372 HGGRVPQASTRGAASASYSTVGDAAVGTRQRVTRWRTRAIH 250
           +GG V +     AASAS+++     VGTR  + RWR + +H
Sbjct: 40  NGGGVERRLRSSAASASWASHLPLEVGTRV-MCRWRDQKLH 79


>03_06_0397 -
           33624883-33625484,33625569-33625632,33625663-33625744,
           33626081-33626649
          Length = 438

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 5   FLCLLLNFIVHFYTIDTARPAP 70
           FL LL+  +V+FYT+D  + +P
Sbjct: 157 FLSLLIGLLVYFYTVDPRKVSP 178


>01_06_0408 - 29125758-29126391,29126513-29126642,29126743-29126887
          Length = 302

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 88  DPGSEARGWSCGVDCVEVNNKIE 20
           +  S +  W+CGV   EVNN +E
Sbjct: 218 ESSSNSSNWNCGVGAPEVNNALE 240


>11_02_0059 -
           7883980-7884141,7884423-7884467,7884629-7884715,
           7885746-7885874,7885995-7886151,7886248-7886350,
           7887050-7887103,7887334-7887451,7888549-7888700,
           7890166-7891852
          Length = 897

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 293 PTAASPTVEYDALAAPRVLACGTRPPCC 376
           P  +  T    A  +P VLACG+  P C
Sbjct: 161 PAVSGATPPIHASISPEVLACGSATPAC 188


>11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809
          Length = 191

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 363 RVPQASTRGAASASYSTVGDAAVGTRQRVTRWRTRA 256
           R  +A+  GA +A+++  GDA          WR  A
Sbjct: 22  RAIRAAVEGAVAAAFAAAGDAVAAAADAAAGWRDAA 57


>08_02_1316 - 26088302-26088405,26089203-26089317
          Length = 72

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 254 MARVRQRVTRCRVPTAASPTVEYDALAAPRVLA 352
           MA    R   CR   AASP  EY A  A R  A
Sbjct: 1   MAPPAHRPASCRTSPAASPCCEYSAACAFRATA 33


>03_05_0356 - 23421394-23421870
          Length = 158

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 260 RVRQRVTRCRVPTAASPTVEYDALAAPRVLACGTRPPC 373
           RV ++ T+   P AASP +   A +AP V +     PC
Sbjct: 102 RVARKETKKMPPAAASPALADIASSAPTVYSKNAAAPC 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,304
Number of Sequences: 37544
Number of extensions: 201527
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)