Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0810
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U97196-7|AAB52462.1|  141|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 258 AIHGKLYIV*IKLTLCK*LANCF*IIFIYLRFKF 157
           A+ G LY+V      C      F  ++IY+RF F
Sbjct: 18  AVRGALYLVPSFFNTCSAAGTFFVFVYIYIRFSF 51


>U97196-7|AAB52462.1|  141|Caenorhabditis elegans Hypothetical
           protein B0207.8 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 162 KFFNAFTEKTQEFINFKLLQYTVNQ 88
           KF N F E T +F+NF+ +  + N+
Sbjct: 98  KFKNGFCENTMKFVNFQNINRSTNE 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,772,629
Number of Sequences: 27780
Number of extensions: 185569
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)