Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0810
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   3.7  
At5g18770.1 68418.m02230 F-box family protein contains F-box dom...    27   8.6  

>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 233 TIYSLPCMARVRQRVTRCRVPTAASPTVEYDALAAPRVLACGTRPPC 373
           T + +PC     Q+  RCR     +P   +     P     G  PPC
Sbjct: 467 THFEVPCGTETNQKPPRCRKLCHITPLCRHGQNQKPHKCHYGACPPC 513


>At5g18770.1 68418.m02230 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 433 LVEHYIHICVQTISDTNLKFIYQIHNRQSLARLRRL 540
           L+ ++  +   TIS T LKFI++ H+   L + R L
Sbjct: 300 LLNNFSGVRNMTISWTTLKFIHRFHDMNPLPKFRDL 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,782,238
Number of Sequences: 28952
Number of extensions: 161110
Number of successful extensions: 333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)