Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0809
         (452 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4B6Q9 Cluster: Sensor protein; n=3; Proteobacteria|Rep...    33   3.8  
UniRef50_Q658B0 Cluster: Putative uncharacterized protein P0482C...    32   5.0  
UniRef50_UPI0000D8A02C Cluster: hypothetical protein e1012e08.tm...    31   8.7  
UniRef50_Q1MZV1 Cluster: Ribosomal RNA small subunit methyltrans...    31   8.7  

>UniRef50_A4B6Q9 Cluster: Sensor protein; n=3; Proteobacteria|Rep:
           Sensor protein - Alteromonas macleodii 'Deep ecotype'
          Length = 1147

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = -2

Query: 157 FWGLLFQITRFTFLYVSAQLGKLIIYLLLFC*VYRLVCTI*IKHL 23
           F+G++ Q +R T++Y+   LG +++Y+L +  +Y+L      +H+
Sbjct: 53  FFGMVGQASRDTWIYLPIMLGPILVYVLGYKFIYKLTLVSKKQHI 97


>UniRef50_Q658B0 Cluster: Putative uncharacterized protein
           P0482C06.24; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0482C06.24 - Oryza sativa subsp. japonica (Rice)
          Length = 154

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 450 GFDSITARERRDRATGVRNTIQRVDHGDF-TVLPPVKNHHPSIR 322
           G   I A ERR R T    TI  V  G F T  P  KNH PS R
Sbjct: 73  GGAGIGAGERRGRPTAETETIDWVPDGPFLTFSPRPKNHPPSCR 116


>UniRef50_UPI0000D8A02C Cluster: hypothetical protein
           e1012e08.tmp0401; n=1; Eimeria tenella|Rep: hypothetical
           protein e1012e08.tmp0401 - Eimeria tenella
          Length = 1209

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 261 KNHKHLKVINNKQFFKSDLIYESKDGDFLRAAGP*SRRDQHVESYYER 404
           K   HLK I NKQ F +  + E  +          +RR+QHV++Y +R
Sbjct: 572 KEENHLKTIRNKQRFSA--VLEETNAAVASQKTLLARRNQHVKAYQQR 617


>UniRef50_Q1MZV1 Cluster: Ribosomal RNA small subunit
           methyltransferase C; n=1; Oceanobacter sp. RED65|Rep:
           Ribosomal RNA small subunit methyltransferase C -
           Oceanobacter sp. RED65
          Length = 335

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 270 KHLKVINNKQFFKSDLIYESKDGDFLRAAGP*SRRDQHVESYYERQSHDRDVHGQ 434
           K L     K F +SD     K    + A+ P + +D  +++YY+ Q ++ D+H Q
Sbjct: 110 KSLAKQTKKLFEQSDKFATGKHSAIVSASKPLTAKDFELQTYYQNQVNELDMHVQ 164


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,503,966
Number of Sequences: 1657284
Number of extensions: 7168121
Number of successful extensions: 13654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13636
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)