Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0809
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    27   1.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   4.1  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.2  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    24   9.5  

>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 128 TSYLKEEAPKII*SCLRRYSMEIKLK 205
           TSY KE+ PK I  C R Y +E ++K
Sbjct: 57  TSYNKEDLPKDILDCPRIYLIEEEVK 82


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 166 LNYFWGLLFQITRF--TFLYVSAQLGK 92
           L YFWGLLF I      F+YV   + K
Sbjct: 197 LTYFWGLLFVIFLLGNGFVYVPVSMWK 223


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 115 YVSAQLGKLIIYLLLF 68
           Y+ A LG L IYLLLF
Sbjct: 546 YLRATLGALTIYLLLF 561


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 386  NVLITATLRSCRP*KITILRFVNKIGFKKLLIVYYL*VFMVFN*PVLSITTGRTFL 219
            NV +TA L      K+ ILR     G+ ++   +Y   F   +  +  I +GR  L
Sbjct: 1047 NVSVTADLALTSRPKVAILREQGVNGYLEMAYAFYASGFTAVDVHMTDILSGRVHL 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,271
Number of Sequences: 5004
Number of extensions: 32546
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)