BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0809 (452 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 27 1.8 SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 4.1 SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 25 7.2 SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 9.5 >SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharomyces pombe|chr 1|||Manual Length = 418 Score = 26.6 bits (56), Expect = 1.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 128 TSYLKEEAPKII*SCLRRYSMEIKLK 205 TSY KE+ PK I C R Y +E ++K Sbjct: 57 TSYNKEDLPKDILDCPRIYLIEEEVK 82 >SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 562 Score = 25.4 bits (53), Expect = 4.1 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Frame = -2 Query: 166 LNYFWGLLFQITRF--TFLYVSAQLGK 92 L YFWGLLF I F+YV + K Sbjct: 197 LTYFWGLLFVIFLLGNGFVYVPVSMWK 223 >SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 24.6 bits (51), Expect = 7.2 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -2 Query: 115 YVSAQLGKLIIYLLLF 68 Y+ A LG L IYLLLF Sbjct: 546 YLRATLGALTIYLLLF 561 >SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase Ade3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 24.2 bits (50), Expect = 9.5 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = -1 Query: 386 NVLITATLRSCRP*KITILRFVNKIGFKKLLIVYYL*VFMVFN*PVLSITTGRTFL 219 NV +TA L K+ ILR G+ ++ +Y F + + I +GR L Sbjct: 1047 NVSVTADLALTSRPKVAILREQGVNGYLEMAYAFYASGFTAVDVHMTDILSGRVHL 1102 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,725,271 Number of Sequences: 5004 Number of extensions: 32546 Number of successful extensions: 64 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 64 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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