BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0809 (452 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_07_0081 - 27572047-27572925,27573285-27573419 28 3.1 >05_07_0081 - 27572047-27572925,27573285-27573419 Length = 337 Score = 28.3 bits (60), Expect = 3.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 411 ATGVRNTIQRVDHGDFTVLPPVKNHHPS 328 A + T +RV F + PP NHHPS Sbjct: 229 AASLLPTYRRVSSSGFYLPPPPNNHHPS 256 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,390,585 Number of Sequences: 37544 Number of extensions: 180130 Number of successful extensions: 287 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 281 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 287 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 883560296 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -