Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0809
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical...    27   6.4  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    27   8.4  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical
           protein Y102A5C.32 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 127 FTFLYVSAQLGKLIIYLLLFC*VYRLVCTI*IKHLDAFMKKL 2
           +  +Y + +LG+   YLLLF    ++VCT    +L  FMK L
Sbjct: 32  YLLIYQTKELGEFRYYLLLF----QVVCTATDLNLTTFMKFL 69


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 221 LTLDDILI*FP*NTYVNTTKLFLGPPLSNNSFYFSVCE 108
           +TLDD+    P  +Y+N  K  +   L+N +FY ++ +
Sbjct: 485 ITLDDL----PLYSYINEAKKIINDELNNETFYRTIAD 518


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 221 LTLDDILI*FP*NTYVNTTKLFLGPPLSNNSFYFSVCE 108
           +TLDD+    P  +Y+N  K  +   L+N +FY ++ +
Sbjct: 485 ITLDDL----PLYSYINEAKKIINDELNNETFYRTIAD 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,492
Number of Sequences: 27780
Number of extensions: 177495
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)