BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0809 (452 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g06160.1 68418.m00687 splicing factor-related contains some s... 29 1.9 >At5g06160.1 68418.m00687 splicing factor-related contains some similarity to splicing factor SP:Q12874 from [Homo sapiens] Length = 504 Score = 28.7 bits (61), Expect = 1.9 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Frame = +3 Query: 243 TKDRLIKNHKHLKVINNKQFFKSDLI--YESKDG---DFLRAAGP*SRRDQHVES-YYER 404 +KDRL++ H+ +I + L+ YE KDG D + A G + +V S +Y+R Sbjct: 34 SKDRLVQGHRVRHMIESIMLTTEKLVETYEDKDGAWDDEIAALGGQTATGTNVFSEFYDR 93 Query: 405 QSHDRDVH 428 R+ H Sbjct: 94 LKEIREYH 101 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,720,242 Number of Sequences: 28952 Number of extensions: 157530 Number of successful extensions: 256 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 256 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 742437000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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