Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0807
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 95 1e-20
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 50 2e-07
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 44 1e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 36 0.007
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 33 0.046
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.19
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.33
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.43
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 29 0.75
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 4.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.3
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 7.0
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.3
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 9.3
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 94.7 bits (225), Expect = 1e-20
Identities = 45/74 (60%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +1
Query: 259 APIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 435
APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+RYFPTQ
Sbjct: 46 APIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQ 105
Query: 436 ALNFAFKDKYKQVF 477
ALNFAFKDK+K++F
Sbjct: 106 ALNFAFKDKFKKMF 119
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 492 QEDAVLRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADV--GKGDGQREF 641
+ D ++F SL FVY LD+ARTRLA D K G+R+F
Sbjct: 124 ERDGYAKWFAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQF 175
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +1
Query: 304 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 483
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 484 GVDKKTQFCVTSLVIW 531
G + F + L+ W
Sbjct: 226 G-PLEGNFLASFLLGW 240
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 203 FAKDFLAGGISAAVSKTA*HP 265
F DF+ GG+SAAVSKTA P
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAP 47
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +1
Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 435
V+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R FP
Sbjct: 38 VSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYG 90
Query: 436 ALNFAFKDKYKQ 471
A+ FA + KQ
Sbjct: 91 AVQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 331 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 447
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 44.4 bits (100), Expect = 1e-05
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +1
Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 435
VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R FP
Sbjct: 35 VAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYRVFPYA 93
Query: 436 ALNFAFKDKYKQVFLGGVDKKT 501
+ F ++ ++V + + +T
Sbjct: 94 GIKFVAYEQVRRVLIRDPEHET 115
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 435
V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P+
Sbjct: 353 VFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSV 409
Query: 436 ALNFAFKDKYKQ 471
A+++ + K+
Sbjct: 410 AISYLVYENCKK 421
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVIRYFPT 432
+ P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++ FP
Sbjct: 246 IYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPY 301
Query: 433 QALNFAFKDKYKQVFLG 483
A + + K+ ++G
Sbjct: 302 SATDLGTFEGLKRTWIG 318
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 32.7 bits (71), Expect = 0.046
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +1
Query: 256 VAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYF 426
VA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 17 VAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEA 76
Query: 427 PTQALNFAFKDKYKQVF 477
P +AL FA D Y +++
Sbjct: 77 PKRALKFASNDTYSKLW 93
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 256 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 432
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 433 QALNFAFKDKYK 468
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 570 VYPLDFARTRLAADVGKGD 626
+YPLD +TR+ VGK D
Sbjct: 26 LYPLDVVKTRMQLSVGKSD 44
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 262 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 441
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 442 NFAFKDKYKQV 474
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 304 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 447
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 316 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 495
A Y DAF +I K +GL +F+RG F ++ + F + +K K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283
Query: 496 KTQF 507
K+ F
Sbjct: 284 KSNF 287
Score = 29.1 bits (62), Expect = 0.57
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANVIRYF 426
VAP++ VK Q Q + G + + I +G+ +RG ++ Y
Sbjct: 23 VAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
Query: 427 PTQALNFAFKDKYKQVFLGGVDKK 498
P+ ++ F +K K +F GV+KK
Sbjct: 83 PSWSIYFVVYEKCKVLF--GVNKK 104
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 28.7 bits (61), Expect = 0.75
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Frame = +1
Query: 241 RLQDRVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 417
++ D P + +QV K + A K + D + G + FW G F +
Sbjct: 180 KVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLS 239
Query: 418 RYFP---TQALNFAFKDKYKQVFLGGVDKKT 501
+ F AL VF G+D+KT
Sbjct: 240 QSFKLHLADALCLGVSANGDMVFSSGIDRKT 270
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 636 HAGHLPYRHRRQDGYVRSQGGTRSTERWLRRHHRRPDYQRS 514
H P R R +D RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 52 YEITPNLLFKNQELVFRDPPSACAATPTSTY 144
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 223 WRYLRRRLQDRVAPIERVKLLLQVQHVSKQ 312
W+Y +RR DR+A + ++ + +SK+
Sbjct: 355 WKYFKRRRDDRIAYMHIIRKRYLNEQISKE 384
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 340 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 432
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 356 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGAT 255
T+ + + + WSA I +LT C SLT S+ T
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLT 566
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 363 DADEGVDDTLVTL----VGGDLLADVLYLEQQLDTLDGCYAVLE 244
D DEGVDD V +GG++ ADV+ + + G Y + E
Sbjct: 921 DDDEGVDDFAVEYGGPDLGGEISADVVDDFDEFEHFQGNYLLDE 964
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 399
V P+E V++ LQ+Q K + Y G D +I + GL +G
Sbjct: 130 VGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,330
Number of Sequences: 5004
Number of extensions: 49444
Number of successful extensions: 174
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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