Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0807
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   161   4e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   161   4e-42
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (392), Expect = 4e-42
 Identities = 73/84 (86%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 435
           VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQ
Sbjct: 28  VAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQ 87

Query: 436 ALNFAFKDKYKQVFLGGVDKKTQF 507
           ALNFAFKDKYKQVFLGGVDK TQF
Sbjct: 88  ALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 30/45 (66%), Positives = 31/45 (68%)
 Frame = +3

Query: 507 LRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREF 641
           LRYF            TSLCFVYPLDFARTRLAADVGK  G+REF
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREF 156



 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 176 MSNLADPVAFAKDFLAGGISAAVSKTA*HP 265
           MS LADPVAFAKDFLAGG++AA+SKT   P
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAP 30



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 262 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 420
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 322 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKT 501
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +      KKT
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKT 210

Query: 502 QFCVT 516
            F ++
Sbjct: 211 PFLIS 215


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (392), Expect = 4e-42
 Identities = 73/84 (86%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 435
           VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQ
Sbjct: 28  VAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQ 87

Query: 436 ALNFAFKDKYKQVFLGGVDKKTQF 507
           ALNFAFKDKYKQVFLGGVDK TQF
Sbjct: 88  ALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 30/45 (66%), Positives = 31/45 (68%)
 Frame = +3

Query: 507 LRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREF 641
           LRYF            TSLCFVYPLDFARTRLAADVGK  G+REF
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREF 156



 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 176 MSNLADPVAFAKDFLAGGISAAVSKTA*HP 265
           MS LADPVAFAKDFLAGG++AA+SKT   P
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAP 30



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 262 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 420
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +1

Query: 322 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKT 501
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D  + +      KKT
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKT 210

Query: 502 QFCVT 516
            F ++
Sbjct: 211 PFLIS 215


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -2

Query: 336 LVTLVGGDLLADVLYLEQQLDTLDGCYAVLETAAEI 229
           +VT+VG  L+   +   ++L ++  C+     AA++
Sbjct: 49  IVTIVGNTLVIAAVITTRRLRSVTNCFVSSLAAADL 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,969
Number of Sequences: 438
Number of extensions: 3603
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)