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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0803
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    25   3.2  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    25   3.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   7.3  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    24   7.3  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    23   9.6  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    23   9.6  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    23   9.6  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    23   9.6  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    23   9.6  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    23   9.6  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   9.6  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   KIGVSSIHRVCGGPVQ*GPRPSIH 74
           ++GV  + +V GG V  G RPS H
Sbjct: 69  QVGVGRLCKVYGGSVNRGMRPSHH 92


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   KIGVSSIHRVCGGPVQ*GPRPSIH 74
           ++GV  + +V GG V  G RPS H
Sbjct: 69  QVGVGRLCKVYGGSVNRGMRPSHH 92


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 195 LDLEGSIGGFIAISVGAVFVVSVYL 121
           L L G I GF+   +   FVVSV+L
Sbjct: 441 LGLRGPITGFLQNCLVIAFVVSVFL 465


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 265 ITRSCQCRPCIHICPSHH 212
           +TR+C      HIC +HH
Sbjct: 116 LTRACITHNIRHICTAHH 133


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 55  DRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKIET 198
           DR P+    +    S P P  +++     D  +TY Y   DG F +ET
Sbjct: 632 DRTPQQPDPQETSESLPSPNTEEMGESYNDIRFTYDY--IDGRF-LET 676


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 125 ICFSMGTGVETSLGSVAM 72
           ICF+ G G+   L SVA+
Sbjct: 82  ICFTKGPGIGAPLNSVAL 99


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 57  PRPSIHSH*A*RSLHACAH 113
           P P  HSH    S+H C H
Sbjct: 211 PFPHYHSHNTMASVHPCKH 229


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 156 SVGAVFVVSVYLFQYGHRRGDFFRL 82
           S+  ++++S YLFQ+G +  + F L
Sbjct: 231 SLRPLYILSSYLFQFGDQFSEAFLL 255


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 171 GFIAISVGAVFVVSVYLFQYGHRRGDFF 88
           GF+ +S G +  V++ +FQ+  +  DFF
Sbjct: 199 GFMDVSTGTILGVTLAIFQW--KYADFF 224


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 281 VGTVLNHS*LPVSSLYPYLPFTSPACDLVSILKDPSAA 168
           +G  LN   L  +  YPY+P TS +  +   L  P+AA
Sbjct: 704 IGYALNLIYLLAAIFYPYMPSTSTS--IYKQLNAPAAA 739


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 310 PSPAGWNPYLLAPYS 266
           PSP+ WN  LL P S
Sbjct: 385 PSPSNWNNRLLQPSS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,958
Number of Sequences: 5004
Number of extensions: 27059
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)

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