Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0803
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 25 3.2
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 25 3.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 7.3
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 24 7.3
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 23 9.6
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 23 9.6
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 23 9.6
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 23 9.6
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 23 9.6
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 23 9.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 9.6
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 3 KIGVSSIHRVCGGPVQ*GPRPSIH 74
++GV + +V GG V G RPS H
Sbjct: 69 QVGVGRLCKVYGGSVNRGMRPSHH 92
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 3 KIGVSSIHRVCGGPVQ*GPRPSIH 74
++GV + +V GG V G RPS H
Sbjct: 69 QVGVGRLCKVYGGSVNRGMRPSHH 92
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 195 LDLEGSIGGFIAISVGAVFVVSVYL 121
L L G I GF+ + FVVSV+L
Sbjct: 441 LGLRGPITGFLQNCLVIAFVVSVFL 465
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 265 ITRSCQCRPCIHICPSHH 212
+TR+C HIC +HH
Sbjct: 116 LTRACITHNIRHICTAHH 133
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 23.4 bits (48), Expect = 9.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 55 DRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKIET 198
DR P+ + S P P +++ D +TY Y DG F +ET
Sbjct: 632 DRTPQQPDPQETSESLPSPNTEEMGESYNDIRFTYDY--IDGRF-LET 676
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 125 ICFSMGTGVETSLGSVAM 72
ICF+ G G+ L SVA+
Sbjct: 82 ICFTKGPGIGAPLNSVAL 99
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 57 PRPSIHSH*A*RSLHACAH 113
P P HSH S+H C H
Sbjct: 211 PFPHYHSHNTMASVHPCKH 229
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 156 SVGAVFVVSVYLFQYGHRRGDFFRL 82
S+ ++++S YLFQ+G + + F L
Sbjct: 231 SLRPLYILSSYLFQFGDQFSEAFLL 255
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 171 GFIAISVGAVFVVSVYLFQYGHRRGDFF 88
GF+ +S G + V++ +FQ+ + DFF
Sbjct: 199 GFMDVSTGTILGVTLAIFQW--KYADFF 224
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 23.4 bits (48), Expect = 9.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 281 VGTVLNHS*LPVSSLYPYLPFTSPACDLVSILKDPSAA 168
+G LN L + YPY+P TS + + L P+AA
Sbjct: 704 IGYALNLIYLLAAIFYPYMPSTSTS--IYKQLNAPAAA 739
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 310 PSPAGWNPYLLAPYS 266
PSP+ WN LL P S
Sbjct: 385 PSPSNWNNRLLQPSS 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.130 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,958
Number of Sequences: 5004
Number of extensions: 27059
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -