BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0803 (339 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 25 3.2 SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 25 3.2 SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 7.3 SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 24 7.3 SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 23 9.6 SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 23 9.6 SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 23 9.6 SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 23 9.6 SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 23 9.6 SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 23 9.6 SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 9.6 >SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Schizosaccharomyces pombe|chr 2|||Manual Length = 143 Score = 25.0 bits (52), Expect = 3.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 3 KIGVSSIHRVCGGPVQ*GPRPSIH 74 ++GV + +V GG V G RPS H Sbjct: 69 QVGVGRLCKVYGGSVNRGMRPSHH 92 >SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosaccharomyces pombe|chr 2|||Manual Length = 144 Score = 25.0 bits (52), Expect = 3.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 3 KIGVSSIHRVCGGPVQ*GPRPSIH 74 ++GV + +V GG V G RPS H Sbjct: 69 QVGVGRLCKVYGGSVNRGMRPSHH 92 >SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1242 Score = 23.8 bits (49), Expect = 7.3 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 195 LDLEGSIGGFIAISVGAVFVVSVYL 121 L L G I GF+ + FVVSV+L Sbjct: 441 LGLRGPITGFLQNCLVIAFVVSVFL 465 >SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr 1|||Manual Length = 456 Score = 23.8 bits (49), Expect = 7.3 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -3 Query: 265 ITRSCQCRPCIHICPSHH 212 +TR+C HIC +HH Sbjct: 116 LTRACITHNIRHICTAHH 133 >SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 23.4 bits (48), Expect = 9.6 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +1 Query: 55 DRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKIET 198 DR P+ + S P P +++ D +TY Y DG F +ET Sbjct: 632 DRTPQQPDPQETSESLPSPNTEEMGESYNDIRFTYDY--IDGRF-LET 676 >SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 346 Score = 23.4 bits (48), Expect = 9.6 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -2 Query: 125 ICFSMGTGVETSLGSVAM 72 ICF+ G G+ L SVA+ Sbjct: 82 ICFTKGPGIGAPLNSVAL 99 >SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 23.4 bits (48), Expect = 9.6 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +3 Query: 57 PRPSIHSH*A*RSLHACAH 113 P P HSH S+H C H Sbjct: 211 PFPHYHSHNTMASVHPCKH 229 >SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 393 Score = 23.4 bits (48), Expect = 9.6 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = -1 Query: 156 SVGAVFVVSVYLFQYGHRRGDFFRL 82 S+ ++++S YLFQ+G + + F L Sbjct: 231 SLRPLYILSSYLFQFGDQFSEAFLL 255 >SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 411 Score = 23.4 bits (48), Expect = 9.6 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -1 Query: 171 GFIAISVGAVFVVSVYLFQYGHRRGDFF 88 GF+ +S G + V++ +FQ+ + DFF Sbjct: 199 GFMDVSTGTILGVTLAIFQW--KYADFF 224 >SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 782 Score = 23.4 bits (48), Expect = 9.6 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 281 VGTVLNHS*LPVSSLYPYLPFTSPACDLVSILKDPSAA 168 +G LN L + YPY+P TS + + L P+AA Sbjct: 704 IGYALNLIYLLAAIFYPYMPSTSTS--IYKQLNAPAAA 739 >SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces pombe|chr 3|||Manual Length = 761 Score = 23.4 bits (48), Expect = 9.6 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -3 Query: 310 PSPAGWNPYLLAPYS 266 PSP+ WN LL P S Sbjct: 385 PSPSNWNNRLLQPSS 399 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.312 0.130 0.379 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,428,958 Number of Sequences: 5004 Number of extensions: 27059 Number of successful extensions: 58 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 58 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 98026656 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits)
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