Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0803
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 33 0.057
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609... 29 0.93
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 29 0.93
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 29 1.2
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791 28 2.1
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 27 3.8
01_06_1794 - 39919363-39920025 27 3.8
01_01_0787 - 6108468-6108643,6110068-6110317 27 5.0
11_03_0197 - 11499012-11499318,11499353-11499489 26 6.6
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 26 6.6
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 26 6.6
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 26 6.6
12_01_0208 - 1567000-1567064,1567192-1567235,1567488-1567576,156... 26 8.7
11_04_0260 - 15509658-15509780,15510092-15510161,15510265-155104... 26 8.7
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 26 8.7
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 26 8.7
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 26 8.7
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 139 RCVCLSVSVWAQA---WRLL*AQWLCIEGRGPHC 47
R CLS++VW W LL Q C +G G HC
Sbjct: 27 RPCCLSIAVWGNPHPPWHLLLRQHRCRDGEGQHC 60
>07_03_1631 -
28258897-28259984,28260518-28260772,28260861-28260975,
28261097-28261149,28261238-28261498,28262122-28262175,
28262294-28262536,28262830-28263073,28263877-28263909
Length = 781
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 174 GGFIAISVGAVFVVSVYLFQYGHRRGDFFRLSGYVSRGAVL 52
GG+ I VF++ +Y++ YG RR F L VS +L
Sbjct: 474 GGWAPIVFAFVFMLVMYVWHYGSRRKYLFDLQNKVSMKWIL 514
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 174 GGFIAISVGAVFVVSVYLFQYGHRRGDFFRLSGYVS 67
GG++ + + VFV +Y++ YG RR F + VS
Sbjct: 548 GGWLPLVLSLVFVAVMYVWHYGTRRKHQFDVQNKVS 583
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 335 GLEAATVHALAGWLESVFVGTVLNHS*LPVSSLYPYLPF 219
G + + A AGWL SV VLN + +P LPF
Sbjct: 513 GFDGRVIFADAGWLGSVHDNRVLNEAIDSYPEEFPRLPF 551
>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
Length = 507
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -1
Query: 186 EGSIGGFIAISVGAVFVVSVYLFQYGHRRGD 94
EG IGG +G V VVSV + + GH RGD
Sbjct: 65 EGGIGGVDEGGIGEVAVVSVGVGE-GHGRGD 94
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 293 ESVFVGTVLNHS*LPVSSLYPYLPF 219
E FVG S LP+SSL+P+L F
Sbjct: 15 EFFFVGITTIASSLPISSLFPFLYF 39
>01_06_1794 - 39919363-39920025
Length = 220
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +1
Query: 79 TEPKEVSTPVPILKQINRHNEDGSYT--YGYEAADGSFKIETKSQAGDVKGKYGYKDDTG 252
T K P LK+ + N+D + GY A+ G + TK+ AG G G G
Sbjct: 45 TSAKRQPPPPSRLKKTSGRNDDAATAAVVGYAASGGGYGGSTKANAGANYGGGGGYGYNG 104
Query: 253 NY 258
Y
Sbjct: 105 GY 106
>01_01_0787 - 6108468-6108643,6110068-6110317
Length = 141
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 128 FICFSMGTGVETSLGSVAMYRGARSSLYW 42
F CF+MG G S G+ A G S W
Sbjct: 107 FTCFAMGIGRVVSAGTAAASAGPIGSSQW 135
>11_03_0197 - 11499012-11499318,11499353-11499489
Length = 147
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 328 RQQRC-MPSPAGWNPYLLAPYSITRSC-QCRPCI 233
R+Q C +P GW+P + A SIT C + RP +
Sbjct: 43 RRQSCRIPVVGGWSPRMDAAESITPDCPRDRPTV 76
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 145 GSYTYGYEAADGSFKIETKSQAGDVKGKYGYKDDTGNYE*LSTVPTNTDSSQPARACTVA 324
G+Y ++ DGS I+ G + G Y D E L+ + + + Q + C V+
Sbjct: 171 GNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPND-----ECLADIADDQNLDQVEQRCIVS 225
Query: 325 ASNP 336
P
Sbjct: 226 VCQP 229
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 67 RYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYKDD 246
R ++++ K + + + + R E G + EA+DG+ + GDVK + G K++
Sbjct: 61 RSMSSKKKRAAIDLSLEAERRRPEERGGGS-DREASDGA--AAAAEEDGDVKQREGPKEE 117
Query: 247 TGNYE 261
TG E
Sbjct: 118 TGGEE 122
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 174 GGFIAISVGAVFVVSVYLFQYGHRRGDFFRLSGYVSRGAVL 52
GG++ + + +F+ +Y++ YG R+ + L VS +L
Sbjct: 481 GGWVPLVLALIFMSVMYIWHYGTRKKYQYDLQNKVSMRYIL 521
>12_01_0208 -
1567000-1567064,1567192-1567235,1567488-1567576,
1568219-1568326,1568416-1568501,1568969-1569056,
1569171-1569344,1569844-1569919,1570003-1570052,
1570140-1570202,1570285-1570338,1570433-1570535,
1570615-1570666,1570849-1570909,1571034-1571074,
1571245-1571323
Length = 410
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 293 ESVFVGTVLNHS*LPVSSLYPYL 225
E FVG S LP+SSL+P+L
Sbjct: 15 EFFFVGITTIASSLPISSLFPFL 37
>11_04_0260 -
15509658-15509780,15510092-15510161,15510265-15510438,
15511098-15511528
Length = 265
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 160 GYEAADGSFKIETKSQAGDVKGKYGYKDDTGNYE*LSTVPTNTDSSQPA 306
GYE+ G+ E + GD G+ G +DD Y S N S+PA
Sbjct: 103 GYESTYGNSYGEAADR-GDGSGQGGGEDDRSGYGAASRYGNNIAVSRPA 150
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 335 GLEAATVHALAGWLESVFVGTVLNHS*LPVSSLYPYLPF 219
G + + A AGW SV VLN + +P LPF
Sbjct: 555 GFDGRVIFADAGWPGSVHDNRVLNEAIDSYPEEFPRLPF 593
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 335 GLEAATVHALAGWLESVFVGTVLNHS*LPVSSLYPYLPF 219
G + + A AGW SV VLN + +P LPF
Sbjct: 589 GFDGRVIFADAGWPGSVHDNRVLNEAIDSYPEEFPRLPF 627
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 335 GLEAATVHALAGWLESVFVGTVLNHS*LPVSSLYPYLPF 219
G + + A AGW SV VLN + +P LPF
Sbjct: 570 GFDGRVIFADAGWPGSVHDNRVLNEAIDSYPEEFPRLPF 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,380,923
Number of Sequences: 37544
Number of extensions: 207794
Number of successful extensions: 428
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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