BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0803 (339 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_15194| Best HMM Match : Ank (HMM E-Value=0.2) 29 0.73 SB_12293| Best HMM Match : OATP (HMM E-Value=0) 27 5.1 SB_601| Best HMM Match : TSP_1 (HMM E-Value=1.8) 27 5.1 SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 26 6.8 SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 26 6.8 SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8 SB_16361| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8 SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2) 26 6.8 >SB_15194| Best HMM Match : Ank (HMM E-Value=0.2) Length = 167 Score = 29.5 bits (63), Expect = 0.73 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 131 DTTKTAPTLMAMKPPMDPSRSRLNRK 208 D + T P L ++PP P R+R+N K Sbjct: 30 DPSSTIPPLSMLEPPSSPVRTRINHK 55 >SB_12293| Best HMM Match : OATP (HMM E-Value=0) Length = 1446 Score = 26.6 bits (56), Expect = 5.1 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 128 TDTTKTAPTLMAMKPPMDPSRSRLNRKQVM*RANMDTRTTLATTS 262 T + T P++ DP R R + +V R NMD + A+T+ Sbjct: 262 TKASNTDPSIFPGPNHFDPKRWRTSCPEVYERKNMDLNSVKASTT 306 >SB_601| Best HMM Match : TSP_1 (HMM E-Value=1.8) Length = 394 Score = 26.6 bits (56), Expect = 5.1 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 310 PSPAGWNPYLLAPYSITRSCQCRPC 236 P+P PY L T+SC PC Sbjct: 36 PAPQNGGPYCLGEGQATQSCDMGPC 60 >SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) Length = 1249 Score = 26.2 bits (55), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 67 RYIATEPKEVSTPVPILKQINRHNED 144 R +T PKE+ P P K I HN D Sbjct: 1100 RLTSTPPKELCIPSPADKSIIDHNHD 1125 >SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) Length = 3922 Score = 26.2 bits (55), Expect = 6.8 Identities = 13/54 (24%), Positives = 29/54 (53%) Frame = +1 Query: 139 EDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYKDDTGNYE*LSTVPTNTDSSQ 300 ++ TY +++ + F+I+ S +GD++ K E ++ V +NT++ Q Sbjct: 1627 DNAKITYAFKSPNDKFEID--STSGDIRTKVALTGTKDVNEKMTVVASNTEAIQ 1678 >SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 886 Score = 26.2 bits (55), Expect = 6.8 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%) Frame = -3 Query: 304 PAGWNPYLLAPYSITRSCQCR--PC 236 P W L P+ + CQCR PC Sbjct: 733 PVSWRVVLKYPFRVVFKCQCRVFPC 757 >SB_16361| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 201 Score = 26.2 bits (55), Expect = 6.8 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -1 Query: 108 HRRGDFFRLSGYVSRGAVLIVLG 40 + RGD R++G+ SRG +L V G Sbjct: 19 YSRGDLLRVNGFYSRGDLLRVNG 41 >SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2) Length = 300 Score = 26.2 bits (55), Expect = 6.8 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Frame = +1 Query: 43 QYNEDRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKI------ETKS 204 +Y R R PK ST + + ++G++TYG GS ++ K+ Sbjct: 91 RYGSTRLLRKAVKNPKAPSTDISGEYAVQHSCKNGNHTYGLPNRYGSTRLLRKAVNNPKA 150 Query: 205 QAGDVKGKY 231 + D+ G+Y Sbjct: 151 PSTDISGEY 159 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.312 0.130 0.379 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,522,302 Number of Sequences: 59808 Number of extensions: 228190 Number of successful extensions: 409 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 409 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 485763447 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits)
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