Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0803
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15194| Best HMM Match : Ank (HMM E-Value=0.2)                       29   0.73 
SB_12293| Best HMM Match : OATP (HMM E-Value=0)                        27   5.1  
SB_601| Best HMM Match : TSP_1 (HMM E-Value=1.8)                       27   5.1  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               26   6.8  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    26   6.8  
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_16361| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2)            26   6.8  

>SB_15194| Best HMM Match : Ank (HMM E-Value=0.2)
          Length = 167

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 131 DTTKTAPTLMAMKPPMDPSRSRLNRK 208
           D + T P L  ++PP  P R+R+N K
Sbjct: 30  DPSSTIPPLSMLEPPSSPVRTRINHK 55


>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
          Length = 1446

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 128 TDTTKTAPTLMAMKPPMDPSRSRLNRKQVM*RANMDTRTTLATTS 262
           T  + T P++       DP R R +  +V  R NMD  +  A+T+
Sbjct: 262 TKASNTDPSIFPGPNHFDPKRWRTSCPEVYERKNMDLNSVKASTT 306


>SB_601| Best HMM Match : TSP_1 (HMM E-Value=1.8)
          Length = 394

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 310 PSPAGWNPYLLAPYSITRSCQCRPC 236
           P+P    PY L     T+SC   PC
Sbjct: 36  PAPQNGGPYCLGEGQATQSCDMGPC 60


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 67   RYIATEPKEVSTPVPILKQINRHNED 144
            R  +T PKE+  P P  K I  HN D
Sbjct: 1100 RLTSTPPKELCIPSPADKSIIDHNHD 1125


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 139  EDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYKDDTGNYE*LSTVPTNTDSSQ 300
            ++   TY +++ +  F+I+  S +GD++ K          E ++ V +NT++ Q
Sbjct: 1627 DNAKITYAFKSPNDKFEID--STSGDIRTKVALTGTKDVNEKMTVVASNTEAIQ 1678


>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = -3

Query: 304 PAGWNPYLLAPYSITRSCQCR--PC 236
           P  W   L  P+ +   CQCR  PC
Sbjct: 733 PVSWRVVLKYPFRVVFKCQCRVFPC 757


>SB_16361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 108 HRRGDFFRLSGYVSRGAVLIVLG 40
           + RGD  R++G+ SRG +L V G
Sbjct: 19  YSRGDLLRVNGFYSRGDLLRVNG 41


>SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2)
          Length = 300

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +1

Query: 43  QYNEDRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKI------ETKS 204
           +Y   R  R     PK  ST +     +    ++G++TYG     GS ++        K+
Sbjct: 91  RYGSTRLLRKAVKNPKAPSTDISGEYAVQHSCKNGNHTYGLPNRYGSTRLLRKAVNNPKA 150

Query: 205 QAGDVKGKY 231
            + D+ G+Y
Sbjct: 151 PSTDISGEY 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,302
Number of Sequences: 59808
Number of extensions: 228190
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)