Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0803
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-5|AAB70324.1|  583|Caenorhabditis elegans Hypothetical ...    29   0.64 
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    29   0.85 
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AF014939-9|AAB63931.2|  246|Caenorhabditis elegans Hypothetical ...    26   6.0  

>AF024493-5|AAB70324.1|  583|Caenorhabditis elegans Hypothetical
           protein F23F1.6 protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = -1

Query: 321 NGACPRRLAGIRICWHR-TQXXXXXXXXXXSIFALHITCLRFSLDLEGSIGGFIAISVGA 145
           NG C +     +  W   ++           IF      + F   +  + GG I ++VGA
Sbjct: 427 NGGCLKSWVPFQGVWENFSEGISIRVAVAGLIFGYICLAIPFRTGIFSNAGGIILLTVGA 486

Query: 144 VFVVSVYLFQYGHRR 100
            F +  ++F  GH +
Sbjct: 487 AFSLLSFVFILGHEQ 501


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +3

Query: 228 IWIQGRHWQLRVIEYGAN 281
           IWI+G +W+L++IE+G +
Sbjct: 586 IWIKGFNWKLKMIEFGGS 603


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 245 SSLYPYLPFTSPACDLVSILKDPSAAS 165
           + + P+LP  SP+ D  +   DPS +S
Sbjct: 358 TKIQPFLPSPSPSNDATTTTSDPSVSS 384


>AF014939-9|AAB63931.2|  246|Caenorhabditis elegans Hypothetical
           protein ZC132.9 protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 216 ITCLRFSLDLEGSIGGFIAISVGAVFV 136
           I  + F+L L G++ GF+ + VG +FV
Sbjct: 185 IKIILFALFLLGTVTGFMPVIVGTIFV 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.130    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,170,964
Number of Sequences: 27780
Number of extensions: 162003
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)