BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0803 (339 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF024493-5|AAB70324.1| 583|Caenorhabditis elegans Hypothetical ... 29 0.64 AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 29 0.85 U40955-6|AAA81754.1| 539|Caenorhabditis elegans Hypothetical pr... 26 6.0 AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical ... 26 6.0 >AF024493-5|AAB70324.1| 583|Caenorhabditis elegans Hypothetical protein F23F1.6 protein. Length = 583 Score = 29.5 bits (63), Expect = 0.64 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = -1 Query: 321 NGACPRRLAGIRICWHR-TQXXXXXXXXXXSIFALHITCLRFSLDLEGSIGGFIAISVGA 145 NG C + + W ++ IF + F + + GG I ++VGA Sbjct: 427 NGGCLKSWVPFQGVWENFSEGISIRVAVAGLIFGYICLAIPFRTGIFSNAGGIILLTVGA 486 Query: 144 VFVVSVYLFQYGHRR 100 F + ++F GH + Sbjct: 487 AFSLLSFVFILGHEQ 501 >AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical protein F18A12.7 protein. Length = 666 Score = 29.1 bits (62), Expect = 0.85 Identities = 9/18 (50%), Positives = 16/18 (88%) Frame = +3 Query: 228 IWIQGRHWQLRVIEYGAN 281 IWI+G +W+L++IE+G + Sbjct: 586 IWIKGFNWKLKMIEFGGS 603 >U40955-6|AAA81754.1| 539|Caenorhabditis elegans Hypothetical protein F48B9.1 protein. Length = 539 Score = 26.2 bits (55), Expect = 6.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 245 SSLYPYLPFTSPACDLVSILKDPSAAS 165 + + P+LP SP+ D + DPS +S Sbjct: 358 TKIQPFLPSPSPSNDATTTTSDPSVSS 384 >AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical protein ZC132.9 protein. Length = 246 Score = 26.2 bits (55), Expect = 6.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 216 ITCLRFSLDLEGSIGGFIAISVGAVFV 136 I + F+L L G++ GF+ + VG +FV Sbjct: 185 IKIILFALFLLGTVTGFMPVIVGTIFV 211 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.312 0.130 0.379 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,170,964 Number of Sequences: 27780 Number of extensions: 162003 Number of successful extensions: 330 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 330 length of database: 12,740,198 effective HSP length: 72 effective length of database: 10,740,038 effective search space used: 429601520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits)
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