Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0800
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   2.7  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    27   2.7  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   3.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   3.6  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   8.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   8.4  

>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +1

Query: 154 IEAIEITLCIPPLILSLE-----AKL*IVLYKIWKPNKQLM*RFILKPKLNK*TLYFFLN 318
           I +++  +C  P IL+++      KL   + K  + +K L+   +LK +L K  +  F+N
Sbjct: 209 IASLQKLVCRNPFILAVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVN 268

Query: 319 RLRKTVNVKLF 351
            + +   +KLF
Sbjct: 269 EINRCYRLKLF 279


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 510 LLLCNFSWRRQRISYCLCWSW 448
           L + NF WR +RI + L  SW
Sbjct: 609 LKIFNFLWRLKRIEFALAHSW 629


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = -1

Query: 359 KFQNNFTFTVFRSRFKKKYNVYLF------SLGFKINLHISCLLGFHILYNTI*SFA 207
           K +N     V  +R + ++ +YL+       + ++ +L +S  L F+ILYN+I S A
Sbjct: 819 KLENLGIRLVVLNRVRSRFGLYLYYDVVKNMIDYRKDLIVSMTLTFYILYNSIMSKA 875


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 534 NALSPIVILLLCNFSWRRQRISYCLCWSWTFLVISLA 424
           ++LSP+++L +CN +   + +S+  C     L  SL+
Sbjct: 542 SSLSPVILLTICNIAPFVENLSFVTCAKLMQLCSSLS 578


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 587 ITALSRHRQVDGTVRVQE--MPY 525
           I  L  H+Q DGTV+V E  +PY
Sbjct: 422 IAILENHQQEDGTVKVPETLVPY 444


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 139 STWDVIMYKPYLAYTDKKNLDNFGVN 62
           S+WD +M  P   Y D   +D F ++
Sbjct: 87  SSWDYMMNVPIRVYNDADTMDPFSLD 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,553
Number of Sequences: 5004
Number of extensions: 52151
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)