Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0800
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)                      42   5e-04
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)                       34   0.10 
SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9)                     32   0.40 
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 29   3.8  
SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08)                   28   5.0  
SB_5150| Best HMM Match : GRP (HMM E-Value=5.1)                        28   6.6  

>SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)
          Length = 364

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/38 (47%), Positives = 27/38 (71%)
 Frame = -2

Query: 481 AKDQLLPLLVMDVLGDIPGLPGVFVAGIFSAALR*IYH 368
           + DQ+LP  V++ LG + GLPG+F A +++ ALR I H
Sbjct: 292 SNDQVLPYFVINKLGHLQGLPGMFTACLYAGALRYIRH 329


>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
          Length = 442

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -2

Query: 472 QLLPLLVMDVLGDIPGLPGVFVAGIFSAAL 383
           Q+LP  V++ LG + GLPG+F A +++ AL
Sbjct: 219 QILPYFVINKLGYLKGLPGMFTACLYAGAL 248


>SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9)
          Length = 127

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 534 NALSPIV-ILLLCNFSWRRQ-RISYCLCWSWT 445
           N +SP++ +LL CN SWRR+   S+ LC  WT
Sbjct: 20  NNVSPLIAVLLSCNCSWRRKWTHSHHLCNVWT 51


>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 507 LLCNFSWRRQRISYCLCWSWTFLVISLAYQECLLLAYSVQH 385
           L C FS  R+ +  CLC   TF + S++   CL +   + +
Sbjct: 50  LYCIFSSVRRPLGLCLCAVSTFTITSISIDRCLAVRLKMDY 90


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 86  FFICVSKVRFIHDYIPCRILGSQ 154
           F +CVS   F H Y+P  I+GS+
Sbjct: 180 FRLCVSSSIFAHSYLPTPIMGSE 202


>SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08)
          Length = 536

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -3

Query: 549 RAGSRNALS---PIVILLLCNFSWRRQRISYCLCWSWTFLV--ISLAYQECLLLAYSV 391
           R G RN ++    I IL++CN  +    ++  L WSW+  V  +S    + L  A+S+
Sbjct: 402 RTGKRNDVTLAKRIFILVMCNMFFFFLPVAISLIWSWSGTVRSVSRTATDVLTSAFSI 459


>SB_5150| Best HMM Match : GRP (HMM E-Value=5.1)
          Length = 151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 20  CRQRTKI*RNEKYNIYSEIIKIFFICVS 103
           CR+R +  R   Y+ YS   ++FF+CV+
Sbjct: 91  CRRRRRRYRRRGYSKYSGTEELFFVCVT 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,980
Number of Sequences: 59808
Number of extensions: 372220
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)