Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0800
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical ...    34   0.088
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    31   0.82 
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    31   0.82 
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    31   0.82 
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    31   0.82 
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    31   0.82 
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    31   0.82 
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    30   1.4  
AF040651-2|AAB95015.1|  154|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF016684-3|AAB66209.2|  157|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF026214-2|AAB71314.2|  446|Caenorhabditis elegans Hypothetical
           protein F52H2.4 protein.
          Length = 446

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 475 DQLLPLLVMDVLGDIPGLPGVFVAGIFSAAL 383
           ++LLP  VMDV    PG  G+F A ++SA +
Sbjct: 227 NELLPRFVMDVTSKYPGSVGLFAAAVYSAGI 257


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 KKYNVYLFSLGFKINLHISCLL 246
           +KYN YLF +GF I  ++ C++
Sbjct: 430 RKYNFYLFEVGFTILFNVECII 451


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 KKYNVYLFSLGFKINLHISCLL 246
           +KYN YLF +GF I  ++ C++
Sbjct: 430 RKYNFYLFEVGFTILFNVECII 451


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 KKYNVYLFSLGFKINLHISCLL 246
           +KYN YLF +GF I  ++ C++
Sbjct: 488 RKYNFYLFEVGFTILFNVECII 509


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 KKYNVYLFSLGFKINLHISCLL 246
           +KYN YLF +GF I  ++ C++
Sbjct: 488 RKYNFYLFEVGFTILFNVECII 509


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 KKYNVYLFSLGFKINLHISCLL 246
           +KYN YLF +GF I  ++ C++
Sbjct: 534 RKYNFYLFEVGFTILFNVECII 555


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 KKYNVYLFSLGFKINLHISCLL 246
           +KYN YLF +GF I  ++ C++
Sbjct: 460 RKYNFYLFEVGFTILFNVECII 481


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 434 YPWLTRSVCCWHIQCSIEVNLPFL*KF--QNNFTFTVFRS 321
           Y +L   +  W +  SI+ N PFL  F   +NFTF  + S
Sbjct: 236 YCFLYTGILMWSVITSIDSNFPFLPAFIVNHNFTFLTYSS 275


>AF040651-2|AAB95015.1|  154|Caenorhabditis elegans Hypothetical
           protein W04H10.2 protein.
          Length = 154

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 249 VGFPYFIQYNLE-FCLKTQDEWWYTQCDFYGLYC 151
           + F +FIQ +L+ F L+   +W Y+ C  YG  C
Sbjct: 18  IWFSFFIQKSLDQFFLENCSKWTYSICTIYGNSC 51


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -2

Query: 400 IFSAALR*IYHSCKNFRITSHSRF--FVADLRKSIMFIYLVWALR*TFTSVVCWVSIFYT 227
           IF  A+  +  +  +F I    R   ++   + S ++ Y+ W         V ++S+F T
Sbjct: 163 IFCMAIFSVLSALLHFPIVKKIRALTYLDSTQLSTLYTYIFWLTIFIVVFKVIYISLFTT 222

Query: 226 IQFRVLPQDSG*VVVYTM*FLWPLLRP 146
           I F  LPQ S  +++Y +  +  L  P
Sbjct: 223 IFFIFLPQYSIQLLIYIIFIVEGLTTP 249


>U64848-13|AAY86245.1|  339|Caenorhabditis elegans Hypothetical
           protein C50E3.15 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 246 GFPYFIQYNLEFCLKTQDEW-WYTQCDFYGLYCDPKIRH 133
           G+ + ++YN  +CLK  ++W  +      GLY D    H
Sbjct: 113 GWKFTLRYNAAYCLKDSEKWGMWIDGKHNGLYFDDDTLH 151


>AF016684-3|AAB66209.2|  157|Caenorhabditis elegans Hypothetical
           protein F45C12.10a protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 504 LCNFSWRRQRISYCLCWSWTFLVISLAYQECLLL 403
           +C     RQ+  +  C+ W  LV  L  ++CL++
Sbjct: 14  VCLLGGERQKYGFGFCFPWEKLVKELVVEDCLVV 47


>AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical
           protein F45C12.10b protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 504 LCNFSWRRQRISYCLCWSWTFLVISLAYQECLLL 403
           +C     RQ+  +  C+ W  LV  L  ++CL++
Sbjct: 73  VCLLGGERQKYGFGFCFPWEKLVKELVVEDCLVV 106


>AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical
           protein F42G2.6 protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 168 NHIVYTTTHPES*GKTLNCIV*NMETQQTTDVKVYLKAQ 284
           NHI +  +H +  G+T+ C+  N  T++   + ++  +Q
Sbjct: 152 NHIFFEKSHRDEYGQTIICMDINWHTKEHGKMSIFFNSQ 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,225
Number of Sequences: 27780
Number of extensions: 291877
Number of successful extensions: 631
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)