Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0797
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.20 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.4  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 384 STPYGSVDRSSPPSLPSNRCGSRNRS--TTSLAPPLYTGSASKR 259
           S  Y S++ ++PP  P  R  S   +  T S  PPLY    +KR
Sbjct: 720 SISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKR 763


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 362 STDPYGVLPLWRSNDLN 412
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 342 LPSNRCGSRNRSTTSLAPPLYTGSA 268
           LP++RC SR  S + + P   +G +
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGES 103


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 67  ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 102


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSP 232
           +SP  L +N  G+  RST    PPL T S S  T  +  +SP
Sbjct: 111 ASPQDLSTN--GAPPRST----PPLSTPSNSNATKSSGLTSP 146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,180
Number of Sequences: 336
Number of extensions: 3003
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)