Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0797
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 161 9e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 77 2e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 77 2e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 73 3e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 3e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 8e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 8e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 47 2e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 39 6e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.053
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.6
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 3.5
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.6
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 26 4.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.6
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 4.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 8.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.1
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 161 bits (390), Expect = 9e-41
Identities = 73/83 (87%), Positives = 78/83 (93%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGP IV+RKCF
Sbjct: 353 QQMWISKQEYDESGPGIVYRKCF 375
Score = 46.0 bits (104), Expect = 4e-06
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKD 514
GIHE TYNSIMKCDVDIRKD
Sbjct: 273 GIHEATYNSIMKCDVDIRKD 292
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 76.6 bits (180), Expect = 2e-15
Identities = 35/83 (42%), Positives = 58/83 (69%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L +N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 76.6 bits (180), Expect = 2e-15
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 344
L+ N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 343 STFQQMWISKQEYDESGP---SIVHRKC 269
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 341
L+ N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 340 TFQQMWISKQEYDESG 293
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIR 520
G+HE Y SI+ CD ++R
Sbjct: 323 GLHELVYQSILACDSELR 340
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 56.4 bits (130), Expect = 3e-09
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = -2
Query: 499 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 353
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 352 AS-LSTFQQMWISKQEYDESG 293
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.4 bits (110), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Frame = -2
Query: 517 GLVANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 380
GL N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 379 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 275
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.4 bits (110), Expect = 8e-07
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
LV+N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 334 QQMWISKQEYDESGPSIV 281
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L+ N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 334 QQMWISKQEYDESGPSIVHRK 272
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 344
L ++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 343 STFQQMWISKQEYDESGPSIVHRK 272
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.053
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -3
Query: 381 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQFRLVI 202
TP + PPS+PS+R R S ++ APP ++ +S PRP A +
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 201 SVN 193
++N
Sbjct: 283 AIN 285
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.12
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = -3
Query: 315 NRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQFRLVISVNLIVRKI 175
NRS +SL+ Y+ SK+T +A+ + R + Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 373 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 272
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 2.6
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 378 PYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPA 223
P SVD S+PPS P PP Y+ SA+ T A++SS PA
Sbjct: 49 PPPSVDHSAPPSGP---------------PPSYSNSAAPATPAASASSAAPA 85
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 384 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAAS 241
S YG+ S PP+ PS + ++ S P Y G +++ +GV A+
Sbjct: 109 SYTYGNNFGSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSARPSGVLAN 156
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 342 LPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSS 235
+P + STT + PPL T S+S T + +SSS
Sbjct: 31 IPPGSLSENDNSTTFIKPPLETASSS--TPIPSSSS 64
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 392 WRSNDLNLHCRWGESCDFLLHTVGDSRVHGGTTGQYGVGY 511
W +N+ + + W ES + L TVG + T G Y GY
Sbjct: 318 WSNNNFDAYSYWHESPNMGLGTVG---MGNFTVGNYPEGY 354
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -2
Query: 523 P*GLVANTVLSGGTTMYPGIADRMQKEI--------TALAPSTMKIKIIAPPERKYSVW 371
P G A +V +GG+ +PGI + I + P +M ++I+ P + + + W
Sbjct: 405 PTGSTAYSVAAGGSLCHPGIPAILISAICPHSLSFRPIILPDSMTLRIVVPLDARSNAW 463
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 448 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 338
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 392 WRSNDLNLHCRWGESCDFLLHTVGDSRVHGGTTGQYGVGY 511
W +N+ + + W ES + L TVG + T G Y GY
Sbjct: 318 WSNNNFDAYSYWHESPNMGLGTVG---MGNFTVGNYPEGY 354
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 491 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 312
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 311 GV 306
V
Sbjct: 534 AV 535
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 357 SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAA 220
SSP S S+ S + ST+S+ P + S+S + +++SSS A+
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSI-PSTSSSSSSTSSSLSSSSSSSTAS 264
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = -3
Query: 387 GSTPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQFRL 208
G+T GS+ + P+L +NR R +S + +Y ++ G+ S + F+L
Sbjct: 428 GATNVGSIVINCDPTLSTNRLVLRKKSLGTFQEAVYKNASPVLDGMPVSRGEQ-VGGFQL 486
Query: 207 VISVNLI 187
+V L+
Sbjct: 487 GSTVVLV 493
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 314 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 400
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 366 VDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQFRLVISVNLI 187
V R+ + P R N TTS YT + SKR + +P+ Q ++ S ++
Sbjct: 291 VPRTDVINEPPRRYSHANGVTTSGTTHSYTSTGSKRYSQMGTEDYQPSFQPNILQSTQVV 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,237
Number of Sequences: 5004
Number of extensions: 45152
Number of successful extensions: 175
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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