Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0797
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_56| Best HMM Match : Actin (HMM E-Value=0) 169 1e-42
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 169 2e-42
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 6e-42
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 146 1e-35
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 56 2e-08
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 54 6e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_54| Best HMM Match : Actin (HMM E-Value=0) 32 0.30
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 30 1.2
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 29 2.1
SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 29 2.1
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 28 4.8
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5) 28 4.8
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.5
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 169 bits (412), Expect = 1e-42
Identities = 78/83 (93%), Positives = 82/83 (98%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L ANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 267 LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 326
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 327 QQMWISKQEYDESGPAIVHRKCF 349
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKD 514
GIHETTYNSIMKCDVDIRKD
Sbjct: 247 GIHETTYNSIMKCDVDIRKD 266
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 169 bits (411), Expect = 1e-42
Identities = 79/83 (95%), Positives = 81/83 (97%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L ANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 256 LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 315
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 QQMWISKQEYDESGPAIVHRKCF 338
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
+ GIHETTYNSIMKCDVDIRKD
Sbjct: 234 SAGIHETTYNSIMKCDVDIRKD 255
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 169 bits (411), Expect = 1e-42
Identities = 79/83 (95%), Positives = 81/83 (97%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L ANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
+ GIHETTYNSIMKCDVDIRKD
Sbjct: 272 SAGIHETTYNSIMKCDVDIRKD 293
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 169 bits (411), Expect = 1e-42
Identities = 79/83 (95%), Positives = 81/83 (97%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L ANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
+ GIHETTYNSIMKCDVDIRKD
Sbjct: 271 SAGIHETTYNSIMKCDVDIRKD 292
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 169 bits (410), Expect = 2e-42
Identities = 79/83 (95%), Positives = 81/83 (97%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L ANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
+ GIHETTYNSIMKCDVDIRKD
Sbjct: 272 SAGIHETTYNSIMKCDVDIRKD 293
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 167 bits (406), Expect = 6e-42
Identities = 78/83 (93%), Positives = 81/83 (97%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L ANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = -3
Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
+ GIHETTYNSIMKCDVDIRKD
Sbjct: 271 SAGIHETTYNSIMKCDVDIRKD 292
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 146 bits (354), Expect = 1e-35
Identities = 66/83 (79%), Positives = 75/83 (90%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
L +N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 334 QQMWISKQEYDESGPSIVHRKCF 266
QQMWI+K+EY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = -3
Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
A GIHE YN IMKCDVDIRKD
Sbjct: 45 APGIHEAIYNCIMKCDVDIRKD 66
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 383
L N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 382 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 254
Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Frame = -2
Query: 517 GLVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 347
GL + +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 346 L 344
L
Sbjct: 230 L 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPPERKYSVWIGGSILAS-LS 341
L VL G T+ Q +TA KI+I PP RK+ V++GG++LA +
Sbjct: 324 LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADIMK 383
Query: 340 TFQQMWISKQEYDESG 293
W++++EY+E G
Sbjct: 384 DKDSFWMTRKEYEEKG 399
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -2
Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 362
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 361 SILASLSTFQQMWISKQEYDE 299
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 573 GIHETTYNSIMKCDVDIRKD 514
GIHE+ + SI KCD+D+R +
Sbjct: 2318 GIHESIFKSIKKCDIDLRAE 2337
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = -3
Query: 384 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTG------SASKRTGVAASSSPRPA 223
S YG +S+P S+ +N+ R + PPL +G ++ K +A+++ P
Sbjct: 571 SAGYGKEAKSAPVSIAANKPFIRPSQDQQVMPPLISGIQAMCETSPKEQAIASANLPAVG 630
Query: 222 AQFRLVIS 199
F+L+++
Sbjct: 631 ETFQLIVT 638
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 339 PSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQ 217
P N+ G++ R +L P++TGS + + P P+A+
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919
>SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -3
Query: 378 PY--GSVDRSSPPSLPSNRCGSRNRSTTSLAP--PLYTGSASKRTGVAASSSPRPAAQ 217
PY G D SP S P+ + G NR T L P P+ T + S P P Q
Sbjct: 708 PYRNGPQDGPSPDSFPNGQAG--NRDITGLVPNGPVTTARCDSSPDILESIKPSPPVQ 763
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 384 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSA-SKRTGVAASSSPRPAA 220
STP ++ R+ P + PS+ G+ + +T AP G+A S G +SS+P A+
Sbjct: 1001 STPGAALSRT-PGAAPSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSSTPGAAS 1055
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 442 FPFAYGRRFQGTWWYHRTIRCWLQVLTDVHVA--LHDGVICGLVDAAS 579
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 505 NTVLSGGTTMYPGIADRMQKEITALAP 425
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_55120| Best HMM Match : DUF854 (HMM E-Value=8.5)
Length = 327
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 442 FPFAYGRRFQGTWWYHRTIRCWLQVLTDVHVA--LHDGVICGLVDAAS 579
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 442 FPFAYGRRFQGTWWYHRTIRCWLQVLTDVHVA--LHDGVICGLVDAAS 579
FP RF+ + +R ++ W VLTD +A L V+ GL+ A+S
Sbjct: 2 FPIEQLARFEASNSAYRLLKPWWDVLTDYLIAAMLVVAVLAGLMQASS 49
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 384 STPY-GSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQFRL 208
STP GS +S PS + R GS TT+ + P + +++ T ++S+PR + L
Sbjct: 85 STPRTGSTTTTSAPSTSTPRTGS----TTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITL 140
Query: 207 VISVNLIV 184
S ++
Sbjct: 141 RTSTTSVM 148
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 387 GSTPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAAQFRL 208
G Y S+ +S P S ++ + +T++ P+ G++ TG+A S RP+A
Sbjct: 597 GGIRYTSLTQS-PTSPFTSILNLKGNTTSTPGTPITIGASGSLTGLAGGSLVRPSASIMS 655
Query: 207 VISVNLIV 184
+ IV
Sbjct: 656 TVQGRRIV 663
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -3
Query: 381 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVAASSSPRPAA 220
TP GS SS SL S S S S+APP T + RTG + P P +
Sbjct: 315 TPAGSSSISSISSLLSPGMIS---SVGSIAPPSPTSTPRSRTGSRTRTPPTPTS 365
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 372 GSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTGVA 247
GS+ SP S P +R GSR R+ PP T S + G A
Sbjct: 338 GSIAPPSPTSTPRSRTGSRTRT-----PPTPTSSRASSRGSA 374
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 357 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD 494
+DPP+ +Y L+GG ++ + FCI G++V PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPE 801
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 384 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSAS 265
STP +V PP PSN + ++ S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 246 QRRRCV*KHFLCTMEGPDSSYSCFEIHICWKVEREARIDPPIHTEY 383
+++RC + F CT+E P + + + CWKV PI T++
Sbjct: 23 KKQRCYDRDFCCTVERP-GLLTIPDDYTCWKVGPMWPFWSPIPTQF 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,382
Number of Sequences: 59808
Number of extensions: 393950
Number of successful extensions: 1682
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -