Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0797
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             134   5e-34
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  134 bits (325), Expect = 5e-34
 Identities = 64/66 (96%), Positives = 65/66 (98%)
 Frame = -2

Query: 514 LVANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 335
           L ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTF
Sbjct: 68  LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTF 127

Query: 334 QQMWIS 317
           QQMWIS
Sbjct: 128 QQMWIS 133



 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -3

Query: 579 ACGIHETTYNSIMKCDVDIRKD 514
           ACGIHETTYNSIMKCDVDIRKD
Sbjct: 46  ACGIHETTYNSIMKCDVDIRKD 67


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 500 RIVRWYHHVPWNRRPYAK 447
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 500 RIVRWYHHVPWNRRPYAK 447
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 288 PLYTGSASKRTGVAASSSP 232
           P  TGS+ + +G +AS+SP
Sbjct: 62  PSPTGSSPQHSGSSASTSP 80


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 502 CWLQVLTDVHVALHDGVI 555
           C  Q+L  VH   H+GV+
Sbjct: 14  CIQQILESVHHCHHNGVV 31


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 337 FQQMWISKQEYDESGPSIVHRK 272
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,084
Number of Sequences: 438
Number of extensions: 3612
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)