BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0796 (511 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 265 3e-72 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 143 2e-35 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 127 1e-30 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 1e-22 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 7e-17 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 80 2e-16 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 31 0.13 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.23 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.31 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.31 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.53 SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.6 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.9 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.8 SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.7 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 265 bits (649), Expect = 3e-72 Identities = 118/130 (90%), Positives = 125/130 (96%) Frame = +3 Query: 114 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSK 293 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG+KDSYVGDEAQSK Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 294 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT* 473 RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121 Query: 474 IMFETFNTPA 503 I+FETFN PA Sbjct: 122 IIFETFNAPA 131 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 143 bits (346), Expect = 2e-35 Identities = 64/126 (50%), Positives = 88/126 (69%), Gaps = 1/126 (0%) Frame = +3 Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTL 311 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM +KD +VG EAQ+ RG+L + Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71 Query: 312 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMT*IMFET 488 + PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ +ET Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131 Query: 489 FNTPAM 506 N PA+ Sbjct: 132 LNVPAL 137 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 127 bits (306), Expect = 1e-30 Identities = 59/126 (46%), Positives = 87/126 (69%), Gaps = 2/126 (1%) Frame = +3 Query: 120 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGKKDSYVGDEAQSK 293 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61 Query: 294 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT* 473 R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121 Query: 474 IMFETF 491 MFE + Sbjct: 122 TMFERY 127 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 100 bits (239), Expect = 1e-22 Identities = 57/145 (39%), Positives = 77/145 (53%), Gaps = 24/145 (16%) Frame = +3 Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGKK-------- 260 +++DNG+G K G+AG+DAP VFP+++ R G G M K Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66 Query: 261 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 419 D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126 Query: 420 LLTEAPLNPKANREKMT*IMFETFN 494 LLTE PLNP NRE IMFE+FN Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFN 151 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 81.4 bits (192), Expect = 7e-17 Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 1/126 (0%) Frame = +3 Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTL 311 LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82 Query: 312 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT*IMFET 488 + P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT ++FE Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141 Query: 489 FNTPAM 506 +N P++ Sbjct: 142 YNAPSV 147 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 79.8 bits (188), Expect = 2e-16 Identities = 46/129 (35%), Positives = 68/129 (52%) Frame = +3 Query: 117 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKR 296 +EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61 Query: 297 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT*I 476 G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120 Query: 477 MFETFNTPA 503 MFE+ PA Sbjct: 121 MFESLRCPA 129 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 70.5 bits (165), Expect = 1e-13 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Frame = +3 Query: 117 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKR 296 EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61 Query: 297 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 470 I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121 Query: 471 *IMFETFNTPA 503 FE + PA Sbjct: 122 EAAFEQLHVPA 132 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 31.1 bits (67), Expect = 0.10 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +3 Query: 177 GDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTLKYP 320 G+ PRA F ++ P H G+++ M KD G+E S +G + + P Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 30.7 bits (66), Expect = 0.13 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Frame = +3 Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTL 311 +V+DNG+ KAGFAG P+ + R + G + ++G+E + TL Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57 Query: 312 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMT*IM 479 ++ H G + +W +W N + P ++ +LLT+ + ++ Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117 Query: 480 FETFNTPA 503 FE F A Sbjct: 118 FEEFQFDA 125 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 29.9 bits (64), Expect = 0.23 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 285 VPHLLHKSPSFPYRPSRPDGGAFPRSRGTR 196 + L+ K+PS+PY SRP A S TR Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 29.5 bits (63), Expect = 0.31 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +3 Query: 378 FYNELRVAPEEHPVLLTE--APLNPKANREKMT*IMFETFNTP 500 +Y L E+HP+LLT+ A L P+ + ++ I ++ NTP Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 29.5 bits (63), Expect = 0.31 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -1 Query: 274 PT*ESFFPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 113 PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 28.7 bits (61), Expect = 0.53 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Frame = +3 Query: 318 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT*IMFE 485 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 Query: 486 TFNTP 500 P Sbjct: 172 ECQVP 176 >SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 127 Score = 27.1 bits (57), Expect = 1.6 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = -3 Query: 314 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 135 F G +F CLI++IR +SH D EHG II C T L G I+YY Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.2 bits (55), Expect = 2.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 253 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 161 P+PT P LPT NT + P+ PAL Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 25.8 bits (54), Expect = 3.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 159 TYRSHCLLPTRQLLRRTS*ISEI 91 TYR H +PT LL T +SEI Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.8 bits (54), Expect = 3.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 Query: 314 FEGQDTSFALCLISYIRVLLSHTDHHA 234 +EG+DT+ +Y+R++L TD A Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100 >SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 564 Score = 24.6 bits (51), Expect = 8.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 237 VMVGMGKKDSYVGDEAQSKRGILTLKYPI 323 +M+G +Y+G AQ KR +LT + I Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,253,343 Number of Sequences: 5004 Number of extensions: 48959 Number of successful extensions: 125 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 118 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 204242806 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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