Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0796
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 265 3e-72
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 143 2e-35
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 127 1e-30
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 1e-22
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 7e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 80 2e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 31 0.13
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.23
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.31
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.31
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.53
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 265 bits (649), Expect = 3e-72
Identities = 118/130 (90%), Positives = 125/130 (96%)
Frame = +3
Query: 114 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSK 293
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG+KDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 294 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT* 473
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 474 IMFETFNTPA 503
I+FETFN PA
Sbjct: 122 IIFETFNAPA 131
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 143 bits (346), Expect = 2e-35
Identities = 64/126 (50%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTL 311
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM +KD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 312 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMT*IMFET 488
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 489 FNTPAM 506
N PA+
Sbjct: 132 LNVPAL 137
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 127 bits (306), Expect = 1e-30
Identities = 59/126 (46%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Frame = +3
Query: 120 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGKKDSYVGDEAQSK 293
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 294 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT* 473
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 474 IMFETF 491
MFE +
Sbjct: 122 TMFERY 127
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 100 bits (239), Expect = 1e-22
Identities = 57/145 (39%), Positives = 77/145 (53%), Gaps = 24/145 (16%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGKK-------- 260
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 261 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 419
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 420 LLTEAPLNPKANREKMT*IMFETFN 494
LLTE PLNP NRE IMFE+FN
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFN 151
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 7e-17
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 1/126 (0%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTL 311
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 312 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT*IMFET 488
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT ++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 489 FNTPAM 506
+N P++
Sbjct: 142 YNAPSV 147
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 79.8 bits (188), Expect = 2e-16
Identities = 46/129 (35%), Positives = 68/129 (52%)
Frame = +3
Query: 117 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKR 296
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 297 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT*I 476
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 477 MFETFNTPA 503
MFE+ PA
Sbjct: 121 MFESLRCPA 129
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.5 bits (165), Expect = 1e-13
Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Frame = +3
Query: 117 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKR 296
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 297 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 470
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 471 *IMFETFNTPA 503
FE + PA
Sbjct: 122 EAAFEQLHVPA 132
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 177 GDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTLKYP 320
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 30.7 bits (66), Expect = 0.13
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGKKDSYVGDEAQSKRGILTL 311
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 312 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMT*IM 479
++ H G + +W +W N + P ++ +LLT+ + ++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 480 FETFNTPA 503
FE F A
Sbjct: 118 FEEFQFDA 125
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.23
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 285 VPHLLHKSPSFPYRPSRPDGGAFPRSRGTR 196
+ L+ K+PS+PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.5 bits (63), Expect = 0.31
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 378 FYNELRVAPEEHPVLLTE--APLNPKANREKMT*IMFETFNTP 500
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.31
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 274 PT*ESFFPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 113
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.7 bits (61), Expect = 0.53
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 318 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT*IMFE 485
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 486 TFNTP 500
P
Sbjct: 172 ECQVP 176
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 1.6
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 314 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 135
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 253 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 161
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 159 TYRSHCLLPTRQLLRRTS*ISEI 91
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 314 FEGQDTSFALCLISYIRVLLSHTDHHA 234
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 237 VMVGMGKKDSYVGDEAQSKRGILTLKYPI 323
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,343
Number of Sequences: 5004
Number of extensions: 48959
Number of successful extensions: 125
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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