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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0795
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   175   6e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   100   3e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    97   2e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    95   9e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    63   3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    60   2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    52   9e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    36   0.006
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    32   0.075
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.23 
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    28   0.93 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   3.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.0  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   5.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.5  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.5  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   8.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  175 bits (425), Expect = 6e-45
 Identities = 79/85 (92%), Positives = 81/85 (95%)
 Frame = +3

Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434
           EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NR
Sbjct: 57  EAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116

Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509
           EKMTQI+FETFN PA YVAIQAVLS
Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAVLS 141



 Score =  116 bits (278), Expect = 4e-27
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +1

Query: 91  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHRAK 270
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG+  ++K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61



 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +2

Query: 509 LYASGRTTGIVLDSGDGVSHT 571
           LYASGRTTGIVLDSGDGV+HT
Sbjct: 142 LYASGRTTGIVLDSGDGVTHT 162



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 568 HPCPSTEGYALPHA 609
           H  P  EGYALPHA
Sbjct: 161 HTVPIYEGYALPHA 174


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 42/99 (42%), Positives = 69/99 (69%)
 Frame = +3

Query: 213 RDGRYGTEGLLCRREAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 392
           + G    + ++   EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 393 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 509
           +LLTE P+NP ANREKM + MFE +    +YVAIQAVLS
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLS 141



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +1

Query: 97  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGERHRA 267
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VG+   A
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 509 LYASGRTTGIVLDSGDGVSH 568
           LYA G ++G+V+DSGDGV+H
Sbjct: 142 LYAQGLSSGVVVDSGDGVTH 161


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 40/76 (52%), Positives = 52/76 (68%)
 Frame = +3

Query: 282 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 461
           +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148

Query: 462 TFNTPAMYVAIQAVLS 509
           +FN   +Y+A+QAVL+
Sbjct: 149 SFNCAGLYIAVQAVLA 164



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +1

Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGER 258
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+  +
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 530 TGIVLDSGDGVSH 568
           TG V+DSGDGV+H
Sbjct: 180 TGTVVDSGDGVTH 192


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 94.7 bits (225), Expect = 9e-21
 Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
 Frame = +3

Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 431
           EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L   PEEHP+LLTE PL    N
Sbjct: 61  EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120

Query: 432 REKMTQIMFETFNTPAMYVAIQAVL---SCTRPVVPPVSCWTPATVSPTPVPIY*GIRTP 602
           +EK+ +  +ET N PA+  ++Q VL   +  R     + C    T S   VPIY G   P
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIP 177



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +1

Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 252
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 29/73 (39%), Positives = 41/73 (56%)
 Frame = +3

Query: 279 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 458
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MF
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122

Query: 459 ETFNTPAMYVAIQ 497
           E+   PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 94  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 195
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = +3

Query: 294 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 473
           P E  +++NWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT+++FE +N 
Sbjct: 86  PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144

Query: 474 PAMYVAIQAVLS 509
           P++   I  + S
Sbjct: 145 PSVAYGIDGLFS 156



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 204
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 51.6 bits (118), Expect = 9e-08
 Identities = 21/67 (31%), Positives = 39/67 (58%)
 Frame = +3

Query: 303 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 482
           +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  + PA 
Sbjct: 74  NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133

Query: 483 YVAIQAV 503
           Y+  QAV
Sbjct: 134 YLTKQAV 140



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 94  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 195
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 294 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 461
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 462 TFNTPAMYVAIQAVL 506
               P   +A + ++
Sbjct: 172 ECQVPGFTIAYEPLM 186


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +3

Query: 354  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 497
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ NTP +    VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 257 LSPT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 90
           + PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 399 IPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 326 IPVSDDSVFDGVFEGQDTSFALCLSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 147
           +P  + +V        +TSFAL  +    S    PT +      P +E +    +S+PA 
Sbjct: 63  LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122

Query: 146 PALHIP 129
           P L+ P
Sbjct: 123 PQLNSP 128


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 254 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 138
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 396 LLTEAPLNPKANREKMTQIMFETFN 470
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 253 LLHKSPSVPYRPSRPDGGAFPRSRET 176
           L+ K+PS PY  SRP   A   S  T
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPT 334


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 584 VDGHGCGRHRRRSPARYRW 528
           +DGH    H  R PA  +W
Sbjct: 69  IDGHSIDVHNERDPANIKW 87


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 154 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGE 255
           G+  PRA F  ++  P H G+++ M  KD   GE
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGE 533


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 474 PAMYVAIQAVLSCTRPVVPPVSCWT 548
           P +Y    ++L   +P+V  ++CWT
Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 PLSYIRVLLSHTDHHALMAG 199
           PL  ++  L H++HH + AG
Sbjct: 322 PLDLLKSFLDHSNHHGVRAG 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,353
Number of Sequences: 5004
Number of extensions: 58043
Number of successful extensions: 191
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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