BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0795 (609 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 6e-45 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 3e-22 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 9e-21 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 2e-10 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 9e-08 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 36 0.006 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.075 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.23 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 0.93 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.0 SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 5.0 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.5 SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 6.5 SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 25 8.7 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 175 bits (425), Expect = 6e-45 Identities = 79/85 (92%), Positives = 81/85 (95%) Frame = +3 Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 434 EAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NR Sbjct: 57 EAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116 Query: 435 EKMTQIMFETFNTPAMYVAIQAVLS 509 EKMTQI+FETFN PA YVAIQAVLS Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAVLS 141 Score = 116 bits (278), Expect = 4e-27 Identities = 50/60 (83%), Positives = 57/60 (95%) Frame = +1 Query: 91 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGERHRAK 270 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG+ ++K Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Score = 46.0 bits (104), Expect = 4e-06 Identities = 20/21 (95%), Positives = 21/21 (100%) Frame = +2 Query: 509 LYASGRTTGIVLDSGDGVSHT 571 LYASGRTTGIVLDSGDGV+HT Sbjct: 142 LYASGRTTGIVLDSGDGVTHT 162 Score = 25.8 bits (54), Expect = 5.0 Identities = 10/14 (71%), Positives = 10/14 (71%) Frame = +1 Query: 568 HPCPSTEGYALPHA 609 H P EGYALPHA Sbjct: 161 HTVPIYEGYALPHA 174 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 99.5 bits (237), Expect = 3e-22 Identities = 42/99 (42%), Positives = 69/99 (69%) Frame = +3 Query: 213 RDGRYGTEGLLCRREAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 392 + G + ++ EA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102 Query: 393 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 509 +LLTE P+NP ANREKM + MFE + +YVAIQAVLS Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLS 141 Score = 48.8 bits (111), Expect = 6e-07 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Frame = +1 Query: 97 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGERHRA 267 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VG+ A Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60 Score = 34.7 bits (76), Expect = 0.011 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = +2 Query: 509 LYASGRTTGIVLDSGDGVSH 568 LYA G ++G+V+DSGDGV+H Sbjct: 142 LYAQGLSSGVVVDSGDGVTH 161 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 97.1 bits (231), Expect = 2e-21 Identities = 40/76 (52%), Positives = 52/76 (68%) Frame = +3 Query: 282 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 461 +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148 Query: 462 TFNTPAMYVAIQAVLS 509 +FN +Y+A+QAVL+ Sbjct: 149 SFNCAGLYIAVQAVLA 164 Score = 43.2 bits (97), Expect = 3e-05 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Frame = +1 Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGER 258 +++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ + Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58 Score = 26.6 bits (56), Expect = 2.8 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 530 TGIVLDSGDGVSH 568 TG V+DSGDGV+H Sbjct: 180 TGTVVDSGDGVTH 192 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 94.7 bits (225), Expect = 9e-21 Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 4/120 (3%) Frame = +3 Query: 255 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 431 EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120 Query: 432 REKMTQIMFETFNTPAMYVAIQAVL---SCTRPVVPPVSCWTPATVSPTPVPIY*GIRTP 602 +EK+ + +ET N PA+ ++Q VL + R + C T S VPIY G P Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIP 177 Score = 63.7 bits (148), Expect = 2e-11 Identities = 27/48 (56%), Positives = 35/48 (72%) Frame = +1 Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 252 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 63.3 bits (147), Expect = 3e-11 Identities = 29/73 (39%), Positives = 41/73 (56%) Frame = +3 Query: 279 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 458 + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122 Query: 459 ETFNTPAMYVAIQ 497 E+ PA Y+A Q Sbjct: 123 ESLRCPATYLAKQ 135 Score = 40.3 bits (90), Expect = 2e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +1 Query: 94 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 195 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 60.5 bits (140), Expect = 2e-10 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = +3 Query: 294 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 473 P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144 Query: 474 PAMYVAIQAVLS 509 P++ I + S Sbjct: 145 PSVAYGIDGLFS 156 Score = 35.9 bits (79), Expect = 0.005 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +1 Query: 109 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 204 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 51.6 bits (118), Expect = 9e-08 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +3 Query: 303 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 482 +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133 Query: 483 YVAIQAV 503 Y+ QAV Sbjct: 134 YLTKQAV 140 Score = 36.7 bits (81), Expect = 0.003 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 94 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 195 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 35.5 bits (78), Expect = 0.006 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Frame = +3 Query: 294 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 461 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 Query: 462 TFNTPAMYVAIQAVL 506 P +A + ++ Sbjct: 172 ECQVPGFTIAYEPLM 186 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 31.9 bits (69), Expect = 0.075 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +3 Query: 354 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 497 +Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 30.3 bits (65), Expect = 0.23 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = -2 Query: 257 LSPT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 90 + PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 399 IPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 28.3 bits (60), Expect = 0.93 Identities = 18/66 (27%), Positives = 29/66 (43%) Frame = -2 Query: 326 IPVSDDSVFDGVFEGQDTSFALCLSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 147 +P + +V +TSFAL + S PT + P +E + +S+PA Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122 Query: 146 PALHIP 129 P L+ P Sbjct: 123 PQLNSP 128 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 2.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -2 Query: 254 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 138 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 3.7 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +3 Query: 396 LLTEAPLNPKANREKMTQIMFETFN 470 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.8 bits (54), Expect = 5.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 253 LLHKSPSVPYRPSRPDGGAFPRSRET 176 L+ K+PS PY SRP A S T Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPT 334 >SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 25.8 bits (54), Expect = 5.0 Identities = 8/19 (42%), Positives = 10/19 (52%) Frame = -2 Query: 584 VDGHGCGRHRRRSPARYRW 528 +DGH H R PA +W Sbjct: 69 IDGHSIDVHNERDPANIKW 87 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 25.4 bits (53), Expect = 6.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 154 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGE 255 G+ PRA F ++ P H G+++ M KD GE Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGE 533 >SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pombe|chr 1|||Manual Length = 910 Score = 25.4 bits (53), Expect = 6.5 Identities = 8/25 (32%), Positives = 15/25 (60%) Frame = +3 Query: 474 PAMYVAIQAVLSCTRPVVPPVSCWT 548 P +Y ++L +P+V ++CWT Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478 >SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 25.0 bits (52), Expect = 8.7 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -1 Query: 258 PLSYIRVLLSHTDHHALMAG 199 PL ++ L H++HH + AG Sbjct: 322 PLDLLKSFLDHSNHHGVRAG 341 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,677,353 Number of Sequences: 5004 Number of extensions: 58043 Number of successful extensions: 191 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 187 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 268287866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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