Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0794
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   0.90 
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    28   1.2  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   4.8  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   4.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   6.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.4  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 306 KNLDENLKQNQYQIQQENYRTFQRQKQLEAAQAKNQANNLPAPQ 437
           ++L    +Q Q Q QQ+  +  Q+Q+Q +  Q + Q     APQ
Sbjct: 251 RSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQ 294


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 252 DSPINGQENQGPYFTSDIKNLDENLKQNQYQIQQENY--RTFQRQKQLEAAQAKNQANNL 425
           +S IN + +Q    +S ++N    L  +Q  ++Q +   R  ++QK +EA +A+   NNL
Sbjct: 276 NSKINLKSHQS---SSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKKAEEFKNNL 332


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 133 LPPFDPRNPAIPVIPSNEYGIHNDVSVQGLPTQEQQPIFQTL 258
           LPPF   N  +   PSN   I+   S Q  P+   +P+  ++
Sbjct: 248 LPPFPDTNSTLTYTPSNSQSIY---SSQSQPSPYSRPLLSSV 286


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 195 YSILVARYYRNGWIPWVKRWQIV 127
           Y  LVA+  R  W  WV R+QIV
Sbjct: 184 YYYLVAKGIRVPWKKWVTRFQIV 206


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 261 INGQENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQRQ 380
           INGQ+ +  +   ++KN  ENL    YQ   +  R   R+
Sbjct: 883 INGQQRRSEFSAENVKNELENL---SYQFGDQRKRNLNRK 919


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 PFDPRNPAIPVIPSNEYGIHNDVSVQGLPTQEQ 237
           P  P+ PA+PV+P  E G  N+  V  LP  ++
Sbjct: 677 PSVPQPPAVPVVP--EAGQLNEPVVPPLPPHDE 707


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +3

Query: 273 ENQGPYFTSDIKNLDENL----KQNQYQIQQENYRTFQRQKQLEAAQ-AKNQANNLPA 431
           +NQ  Y TS I NL+E +    K+N    +  +     R +  EA +  KN + +L A
Sbjct: 463 KNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADLKA 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,486
Number of Sequences: 5004
Number of extensions: 38518
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)