Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0794
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0795 + 6994597-6994774,6994812-6995092,6997289-6997335,699...    31   0.53 
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564...    28   6.5  
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015...    27   8.6  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    27   8.6  

>11_01_0795 +
           6994597-6994774,6994812-6995092,6997289-6997335,
           6997550-6997772
          Length = 242

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 128 FWVCCG-CNCPRCG-NTKAGPSGFQP 57
           FWVCCG C+ P CG    A  SG  P
Sbjct: 108 FWVCCGICSLPSCGAENPAAKSGGAP 133


>01_06_1329 +
           36354340-36354493,36355781-36355942,36356279-36356457,
           36356719-36356918,36356938-36357014,36357110-36357111,
           36357594-36357701,36357806-36358024,36358167-36358448
          Length = 460

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 154 NPAIPVIP--SNEYGIHNDVSVQGLPTQEQQPIF 249
           N  +PV+   SN+YGI  D+S+   P + +  IF
Sbjct: 116 NARVPVLQYVSNQYGISCDISISNYPGRIKSKIF 149


>04_03_0742 +
           19200045-19200053,19200158-19200437,19201331-19201545,
           19201705-19201792,19202277-19202842
          Length = 385

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 7   LALASVVAEAPAPYAPSGWKPEGPAFVXXXXXXXXXXXXXNYLPPFDPRNPAIPVIPSN 183
           +A A++    P    P+G+ P GP +              +Y PP+ P  P  P  PS+
Sbjct: 316 IAAANLYLHYPRFAFPAGYYPPGPGYAYPPPYPP------SYPPPYQPSYPPYPSHPSH 368


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 264 NGQENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQRQKQLEAAQAKNQANNLPA 431
           N   +Q  Y     +   +NL+Q QYQ QQ+N +   + + L+  Q + Q    P+
Sbjct: 187 NQNHHQQQYQQQQQQYQHQNLQQ-QYQQQQQNLQQQYQHQNLQQQQQQQQQQQQPS 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,333
Number of Sequences: 37544
Number of extensions: 289985
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)