Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0794
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20830.1 68414.m02609 expressed protein                             29   3.1  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   5.4  
At1g15780.1 68414.m01893 expressed protein                             27   7.2  
At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) ...    27   9.5  

>At1g20830.1 68414.m02609 expressed protein
          Length = 349

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +3

Query: 291 FTSDIKNLDENLKQNQ-YQIQQENYRTFQR----QKQLEAAQAKNQANNL 425
           F + + ++D++L QN  YQ Q   +R        QK+LEA Q + + NNL
Sbjct: 255 FATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQKKLEALQNEEKLNNL 304


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +3

Query: 180 QRVWNTQ*RVSPRSTYSGAAANIPDSPINGQENQGPYFTSDIKNLDENLKQNQYQIQQEN 359
           Q   NT+ R S      G A N+P S +     Q P+F   I +       NQY   QEN
Sbjct: 142 QESTNTK-RPSIHDMTLGVAVNVPGSNLESTGQQ-PHFGDQIPS-------NQYYPSQEN 192

Query: 360 YRTFQRQ 380
           +R F ++
Sbjct: 193 FRGFDQR 199


>At1g15780.1 68414.m01893 expressed protein
          Length = 1335

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 228 SGAAANIPDSPINGQENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQRQKQLEAAQAK 407
           S A+A    S +    NQ P  +S +    ++LKQ Q Q  Q   +  QRQ Q +  QA+
Sbjct: 800 SSASAQSGLSTLQSNVNQ-PQLSSSLLQ-HQHLKQQQDQQMQLKQQFQQRQMQQQQLQAR 857

Query: 408 NQ 413
            Q
Sbjct: 858 QQ 859


>At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) /
           agamous-like MADS box protein (AGL7) identical to
           SP|P35631 Floral homeotic protein APETALA1 (AGL7
           protein) {Arabidopsis thaliana}
          Length = 256

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 261 INGQENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQRQKQLEAAQAK----NQANNLP 428
           I  ++NQ  Y    I  L +  K  Q Q    + +  +R+K L A Q +    NQ +N+P
Sbjct: 139 IRTRKNQLMY--ESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGHNMP 196

Query: 429 APQAPRQ 449
            P  P+Q
Sbjct: 197 PPLPPQQ 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,703,817
Number of Sequences: 28952
Number of extensions: 218597
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)