Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0790
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   1.1  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   7.9  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 355 PNMFFNSMNINTSLVNKHG*QHKAHST-TRNAFD*KPYASLFSH*TKVETT 206
           P + FNS++INT++   +    K +S  T+N+    P+  +FS  +   TT
Sbjct: 319 PILRFNSLSINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAFSTT 369


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 233 FTLNESRNYIINVKNKHSYFKKIPMFT 153
           +T+NE  N +  + +K SY+K+I + T
Sbjct: 291 YTVNEISNAVQPIYSKPSYWKRIALIT 317


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 320 ITSKQTRLTTQGAQHYAKRIRLKTIREFIFTL--NESRNYIINVKNKHSYFK 171
           +T  Q       AQ   +   +K  R+F FTL   ++R Y I ++ ++  F+
Sbjct: 707 VTDVQDETLIYNAQSPDEEALVKVARDFGFTLLNTKNRRYTIRIRGENKNFR 758


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 458 RPVRWLWWDIAVGNRTLVS 402
           RP+R LWW +    R+L+S
Sbjct: 841 RPIRRLWWPLRSIRRSLLS 859


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,506
Number of Sequences: 5004
Number of extensions: 46120
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)