Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0790
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbona...    29   1.8  
U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbona...    29   1.8  
AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion transpo...    29   1.8  
AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion transpo...    29   1.8  
U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform b protein.
          Length = 883

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 443 LWWD-IAVGNRTLVSVIV*YPFWFPSLYENTKHVF*LDEYQ 324
           L WD I VG  TLVS ++  P+  P+  ++  H+  L EY+
Sbjct: 744 LHWDLIVVGFCTLVSSVLGLPWMCPAAVQSLAHITSLTEYK 784


>U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform a protein.
          Length = 956

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 443 LWWD-IAVGNRTLVSVIV*YPFWFPSLYENTKHVF*LDEYQ 324
           L WD I VG  TLVS ++  P+  P+  ++  H+  L EY+
Sbjct: 744 LHWDLIVVGFCTLVSSVLGLPWMCPAAVQSLAHITSLTEYK 784


>AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion
           transporter ABTS-4b protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 443 LWWD-IAVGNRTLVSVIV*YPFWFPSLYENTKHVF*LDEYQ 324
           L WD I VG  TLVS ++  P+  P+  ++  H+  L EY+
Sbjct: 744 LHWDLIVVGFCTLVSSVLGLPWMCPAAVQSLAHITSLTEYK 784


>AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion
           transporter ABTS-4a protein.
          Length = 956

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 443 LWWD-IAVGNRTLVSVIV*YPFWFPSLYENTKHVF*LDEYQ 324
           L WD I VG  TLVS ++  P+  P+  ++  H+  L EY+
Sbjct: 744 LHWDLIVVGFCTLVSSVLGLPWMCPAAVQSLAHITSLTEYK 784


>U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical
           protein M02E1.1b protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 323 HITSKQTRLT-TQGAQHYAKRIR-------LKTIREFIFTLNESRNYIINVKNKHSYFKK 168
           H+  KQ R++  Q   +Y  R         LK  +EF      +RN++ N + K+ YFKK
Sbjct: 345 HLVEKQKRVSWMQSRNYYRYRTHKVDFKKLLKKQKEFPKARRFTRNFLYNWEKKNRYFKK 404


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
           protein M02E1.1a protein.
          Length = 1077

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
 Frame = -3

Query: 323 HITSKQTRLT-TQGAQHYAKRIR-------LKTIREFIFTLNESRNYIINVKNKHSYFKK 168
           H+  KQ R++  Q   +Y  R         LK  +EF      +RN++ N + K+ YFKK
Sbjct: 345 HLVEKQKRVSWMQSRNYYRYRTHKVDFKKLLKKQKEFPKARRFTRNFLYNWEKKNRYFKK 404


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 110 RVLNDSR*QSNVRFSKETLKNLTDYNFG 27
           R   DSR QS  R+S+E ++N   + FG
Sbjct: 417 RNFRDSRSQSPSRYSREPIRNSQGFTFG 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,554,231
Number of Sequences: 27780
Number of extensions: 252876
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)