Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0790
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   6.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   6.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   6.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 376 FHLFMKTPNMFFNSMNINTSLVN 308
           F + +KTP   +NS N   +L N
Sbjct: 95  FFMMIKTPIFIYNSFNTGFALGN 117


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 230 TLNESRNYIINVKNKHSY 177
           T++ + NY  N  NK++Y
Sbjct: 89  TIHNNNNYKYNYNNKYNY 106


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 376 NQKGYQTMTETRVLLPTAMSHQSHLTGRPGNLDKYTPKIKLK 501
           N+K   +M+  + LLP       +    P +  + TPK + K
Sbjct: 755 NKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKERK 796


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  YNL*DFLAFLSKIERSIVTGCHSKLENRC 121
           +NL D   +  K+E   VTGC  + E RC
Sbjct: 116 FNLIDTKCY--KLEHP-VTGCGERTEGRC 141


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  YNL*DFLAFLSKIERSIVTGCHSKLENRC 121
           +NL D   +  K+E   VTGC  + E RC
Sbjct: 121 FNLIDTKCY--KLEHP-VTGCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  YNL*DFLAFLSKIERSIVTGCHSKLENRC 121
           +NL D   +  K+E   VTGC  + E RC
Sbjct: 121 FNLIDTKCY--KLEHP-VTGCGERTEGRC 146


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 415 LLPTAMSHQSHLTGRPGNLDKYTPKI 492
           L P+  SH SHL+   G    ++P +
Sbjct: 279 LQPSLASHHSHLSSALGRSACHSPGV 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,771
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)