Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0790
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51895.1 68416.m05692 sulfate transporter (ST1) identical to ...    31   0.55 
At1g13890.1 68414.m01630 SNAP25 homologous protein, putative / s...    27   6.7  
At5g03640.1 68418.m00323 protein kinase family protein contains ...    27   8.9  

>At3g51895.1 68416.m05692 sulfate transporter (ST1) identical to
           sulfate transporter [Arabidopsis thaliana] GI:2285885
          Length = 658

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 81  RLLPAVIQNSKIDVVTSYPQKQFVGKH----WNFFKIGMFIFNVDYVVSTF 221
           R L  V+ N K +VV    + +F+G H    W F  +G  +    Y++ TF
Sbjct: 594 RALKLVLSNPKGEVVKKLTRSKFIGDHLGKEWMFLTVGEAVEACSYMLHTF 644


>At1g13890.1 68414.m01630 SNAP25 homologous protein, putative /
           synaptosomal-associated protein SNAP25-like, putative
           (SNAP30) identical to SP|Q9LMG8 Putative SNAP25
           homologous protein SNAP30 (AtSNAP30)
           (Synaptosomal-associated protein SNAP25-like 3)
           {Arabidopsis thaliana}; similar to SP|Q9S7P9 SNAP25
           homologous protein SNAP33 (AtSNAP33)
           (Synaptosomal-associated protein SNAP25-like 1) (SNAP-25
           like protein 1) (Snap25a) {Arabidopsis thaliana};
           contains Pfam profile: PF05739 SNARE domain
          Length = 263

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 339 LKNMFGVFIKRWKPKRISN 395
           L N+ G+F K WKPK+  N
Sbjct: 130 LNNLGGMFSKPWKPKKTKN 148


>At5g03640.1 68418.m00323 protein kinase family protein contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 926

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 309 FTSDVLIFIELKNMFGVFIKRWKPKRISNNDRDESPVTD 425
           + ++VL+ +E  +M GV  +  KP+ I   D     VTD
Sbjct: 646 YVAEVLLALEYLHMLGVIYRDLKPENILVRDDGHIMVTD 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,677
Number of Sequences: 28952
Number of extensions: 223529
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)