Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0788
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    28   0.64 
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    26   3.4  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   5.9  

>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 208 LRYVDLAECTECTLRRSCRVY 146
           +RY+ L+EC+  T+RR+  VY
Sbjct: 150 IRYIGLSECSANTIRRAAAVY 170


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 10  TTLATIAAFASLRGLCDRL*YTNSEKFMNYVL 105
           T LAT AAFA LR +C+ + +  S + +++++
Sbjct: 98  TGLATGAAFAGLRPICEFMTFNFSMQAIDHIV 129


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -2

Query: 71  YHRRSHSPRSD 39
           +HRRS+SPRSD
Sbjct: 115 HHRRSYSPRSD 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,823
Number of Sequences: 5004
Number of extensions: 31848
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)