Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0788
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0017 - 16468486-16468505,16468597-16468807,16469522-164702...    33   0.16 
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281...    27   7.8  

>03_04_0017 -
           16468486-16468505,16468597-16468807,16469522-16470214,
           16470338-16470398,16470624-16470706
          Length = 355

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 467 PEFKIHSFRRRWSARILIVLRCSKQPPGSAEADSIAKLSSCGASAADLKVPSNFF 303
           PEF +   R+   A   ++LR   +    A A + A  + CG   AD  +P + F
Sbjct: 134 PEFSVEEVRKLQDALARLLLRARSKKYSEAVATAAATATCCGGGGADSGLPLDMF 188


>03_06_0110 -
           31727376-31727381,31727554-31727664,31728071-31728133,
           31729202-31729331,31729532-31729701,31729800-31729859,
           31729941-31730018,31730108-31730197,31730275-31731118,
           31731220-31731281,31731362-31731423,31731511-31731700
          Length = 621

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 208 KRQITNVATAPLSEYKRILFSL 273
           K+QI NVAT  + E KR+L S+
Sbjct: 463 KKQIRNVATGQVDEAKRVLNSI 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,141
Number of Sequences: 37544
Number of extensions: 222673
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)