Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0788
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7746| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_20698| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               27   7.9  
SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_7746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 26  LLRSRHYEDCATVCDIRTVKSS 91
           +LR RH+E CA   D RT K+S
Sbjct: 82  ILRGRHFETCAGPSDFRTSKAS 103


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 318 NFEIGSRGPTRGQLSYRICFCRTGRLFAAP*DYQNPGAPPSPKRMNFEF 464
           ++++    P + + +     C    ++AAP +YQ P + P  K+  ++F
Sbjct: 327 SYQVPLSAPDKPEKTGGCSECDEPHIYAAPSNYQEPPSSPEAKQGKYDF 375


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 460  SKFILLGEGGAPGF**S*GAANNRPVRQKQIR*LSCPLVGPRLP 329
            ++F ++  GG+ G   S  AA N P RQ+ ++   C  V  R+P
Sbjct: 1579 ARFEMVNGGGSRG---SRSAAQNGPSRQRTVQFPGCSSVSTRIP 1619


>SB_20698| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 376

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 208 LRYVDLAECTECTLRRSCRVYFDRKRHVI*FKQISTRSS*TFHCSYITDGRTVLVVTRTQ 29
           L   D A CT+ T + +  V     R    ++   T S+   HC+  T    + V TRT+
Sbjct: 310 LHQTDSAHCTDFTRQTAHTVQTSPNRQRTLYRLHQTDSA---HCTDFTKQTVLTVQTRTR 366

Query: 28  QWSR 17
           Q +R
Sbjct: 367 QTAR 370


>SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +1

Query: 52  LCDRL*YTNSEKFMNYVLIFV*TISRGASYRNKRDKTVSRCIPYIQRGLHNAKRQITNVA 231
           LCD     +     NY L  +  +S+ A     +DKTV R +   +  +    RQ   + 
Sbjct: 88  LCDMQALRSYNDGYNYFLTVIDVLSKYAWVAPFKDKTVKRLVEAFE-SIFEGGRQPEKLQ 146

Query: 232 TAPLSEYKRILFSLVL 279
           T   +E+K  +F   L
Sbjct: 147 TDDGTEFKNRIFQAFL 162


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 259 ILFSLVLVACAVDAAKKFEGTLRSAAEAPQEDNLAIESASAEPGGC 396
           +L   V  + A   AKK  GT+ + A  P  + LA   +  E  GC
Sbjct: 557 MLVGAVEGSVAFTVAKKLAGTMATVASYPNAETLAYALSRDEIDGC 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,275
Number of Sequences: 59808
Number of extensions: 258273
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)