Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0788
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    27   5.3  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    27   5.3  
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    27   5.3  

>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 229 ATAPLSEYKRILFSLVLVACAVDAAKKFEGTLRSAAEAPQEDNLAIESASAEP 387
           A A   E ++  F  +  ACA  AAK+ +G    A +AP+E     E  + EP
Sbjct: 357 ANAEAEEPEKKTFVTMAAACASKAAKEQDGVAPEAQDAPKEAEAPAE-VTPEP 408


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 146  INATRPSQGAFRTFSEVYITQNVR*QMLPRPLSASTSGFYSV 271
            ++  RP Q  FR F +V I  N R ++   P+  +  G Y +
Sbjct: 1378 LHGIRPDQQYFRHFPQVIIFGNNRIELEHIPMEINDDGIYKI 1419


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 146  INATRPSQGAFRTFSEVYITQNVR*QMLPRPLSASTSGFYSV 271
            ++  RP Q  FR F +V I  N R ++   P+  +  G Y +
Sbjct: 1378 LHGIRPDQQYFRHFPQVIIFGNNRIELEHIPMEINDDGIYKI 1419


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 146  INATRPSQGAFRTFSEVYITQNVR*QMLPRPLSASTSGFYSV 271
            ++  RP Q  FR F +V I  N R ++   P+  +  G Y +
Sbjct: 1378 LHGIRPDQQYFRHFPQVIIFGNNRIELEHIPMEINDDGIYKI 1419


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 217 ITNVATAPLSEYKRILFSLVLVACAVDAAKKFEGTLRSAAEAPQEDNLA 363
           I+  A AP+   K +L  +  V+  V A KK++G +   A  P+E   A
Sbjct: 25  ISKTAVAPIERVK-LLLQVSDVSETVTADKKYKGIMDVLARVPKEQGYA 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,156,036
Number of Sequences: 27780
Number of extensions: 190860
Number of successful extensions: 324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)