BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0788 (477 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical ... 29 1.3 Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 5.3 AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 5.3 AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 5.3 AF003141-4|AAK21485.1| 300|Caenorhabditis elegans Hypothetical ... 27 5.3 >AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical protein W06H3.2 protein. Length = 415 Score = 29.5 bits (63), Expect = 1.3 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +1 Query: 229 ATAPLSEYKRILFSLVLVACAVDAAKKFEGTLRSAAEAPQEDNLAIESASAEP 387 A A E ++ F + ACA AAK+ +G A +AP+E E + EP Sbjct: 357 ANAEAEEPEKKTFVTMAAACASKAAKEQDGVAPEAQDAPKEAEAPAE-VTPEP 408 >Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical protein T22A3.8 protein. Length = 3102 Score = 27.5 bits (58), Expect = 5.3 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 146 INATRPSQGAFRTFSEVYITQNVR*QMLPRPLSASTSGFYSV 271 ++ RP Q FR F +V I N R ++ P+ + G Y + Sbjct: 1378 LHGIRPDQQYFRHFPQVIIFGNNRIELEHIPMEINDDGIYKI 1419 >AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical protein T22A3.8 protein. Length = 3102 Score = 27.5 bits (58), Expect = 5.3 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 146 INATRPSQGAFRTFSEVYITQNVR*QMLPRPLSASTSGFYSV 271 ++ RP Q FR F +V I N R ++ P+ + G Y + Sbjct: 1378 LHGIRPDQQYFRHFPQVIIFGNNRIELEHIPMEINDDGIYKI 1419 >AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha chain protein. Length = 3102 Score = 27.5 bits (58), Expect = 5.3 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 146 INATRPSQGAFRTFSEVYITQNVR*QMLPRPLSASTSGFYSV 271 ++ RP Q FR F +V I N R ++ P+ + G Y + Sbjct: 1378 LHGIRPDQQYFRHFPQVIIFGNNRIELEHIPMEINDDGIYKI 1419 >AF003141-4|AAK21485.1| 300|Caenorhabditis elegans Hypothetical protein W02D3.6 protein. Length = 300 Score = 27.5 bits (58), Expect = 5.3 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +1 Query: 217 ITNVATAPLSEYKRILFSLVLVACAVDAAKKFEGTLRSAAEAPQEDNLA 363 I+ A AP+ K +L + V+ V A KK++G + A P+E A Sbjct: 25 ISKTAVAPIERVK-LLLQVSDVSETVTADKKYKGIMDVLARVPKEQGYA 72 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,156,036 Number of Sequences: 27780 Number of extensions: 190860 Number of successful extensions: 324 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 324 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 871571276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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